Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0080.Seq
         (479 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127311-1|BAC86927.1|  223|Homo sapiens protein ( Homo sapiens ...    29   8.5  
AK023901-1|BAB14716.1|  207|Homo sapiens protein ( Homo sapiens ...    29   8.5  
AB051490-1|BAB21794.1| 1165|Homo sapiens KIAA1703 protein protein.     29   8.5  

>AK127311-1|BAC86927.1|  223|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45380 fis, clone BRHIP3020733. ).
          Length = 223

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 223 ATSVSATSPLCTLGTKHRAPADIIDRAPLPPNR 125
           A S+ A +P C L   HR    + D   LPP+R
Sbjct: 154 APSLPAQAPWCLLSPGHRGATSLPDTMMLPPSR 186


>AK023901-1|BAB14716.1|  207|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13839 fis, clone THYRO1000777. ).
          Length = 207

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -2

Query: 316 GHLRYSLTDVPPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPA 161
           G   Y LT++PP     PG  S+ +     TA S        TLGT+  AP+
Sbjct: 125 GTTHYILTELPPGVQGEPGLYSHTVLE---TADSQELLQAGATLGTEAGAPS 173


>AB051490-1|BAB21794.1| 1165|Homo sapiens KIAA1703 protein protein.
          Length = 1165

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -2

Query: 316  GHLRYSLTDVPPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPA 161
            G   Y LT++PP     PG  S+ +     TA S        TLGT+  AP+
Sbjct: 1083 GTTHYILTELPPGVQDEPGLYSHTVLE---TADSQELLQAGATLGTEAGAPS 1131


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,721,967
Number of Sequences: 237096
Number of extensions: 1740679
Number of successful extensions: 3772
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3771
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4270724850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)