Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0080.Seq
         (479 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023953-1|ABB36457.1|  509|Drosophila melanogaster GH08757p pro...    33   0.15 
U04809-1|AAA19430.1|  622|Drosophila melanogaster cocaine-sensit...    29   3.3  
AY071023-1|AAL48645.1|  622|Drosophila melanogaster RE10485p pro...    29   3.3  
AE014298-1714|AAF48114.1| 1373|Drosophila melanogaster CG15737-P...    29   3.3  
AE013599-3863|AAF47200.1|  622|Drosophila melanogaster CG4545-PA...    29   3.3  
AE014296-1023|AAF50736.2|  461|Drosophila melanogaster CG13287-P...    28   7.6  

>BT023953-1|ABB36457.1|  509|Drosophila melanogaster GH08757p
           protein.
          Length = 509

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 19/77 (24%), Positives = 35/77 (45%)
 Frame = -2

Query: 385 HLDQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVSNRITREF*TATSVSA 206
           +L  + F P+ P   +  A        Y+ +  P  + +PP S  +++      ATS ++
Sbjct: 423 NLVHSHFLPYVPTTTASTATATNAIATYAASATPSPTPTPPPSAGHQLPMGHANATSTTS 482

Query: 205 TSPLCTLGTKHRAPADI 155
           T+   T  T + +PA I
Sbjct: 483 TANTTTTTTTYVSPAGI 499


>U04809-1|AAA19430.1|  622|Drosophila melanogaster cocaine-sensitive
           serotonin transporterprotein.
          Length = 622

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 175 HRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRET 71
           H  PA + D  PL P   +NE + VV    R+RET
Sbjct: 44  HTTPAKVTD--PLAPKLANNERILVVSVTERTRET 76


>AY071023-1|AAL48645.1|  622|Drosophila melanogaster RE10485p
           protein.
          Length = 622

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 175 HRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRET 71
           H  PA + D  PL P   +NE + VV    R+RET
Sbjct: 44  HTTPAKVTD--PLAPKLANNERILVVSVTERTRET 76


>AE014298-1714|AAF48114.1| 1373|Drosophila melanogaster CG15737-PA
           protein.
          Length = 1373

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 172 GVSFQACRVVTWRKRSSPFKTPA*SGSRHCQAGSLTG-AVHLSKNNAGVLRPA 327
           G   QA     W   SSP   PA  GS  C +G+  G + H +  NAG LRPA
Sbjct: 775 GQGHQAPPATMWPHSSSPCY-PASYGSS-CGSGTGAGTSPHNNDGNAGALRPA 825


>AE013599-3863|AAF47200.1|  622|Drosophila melanogaster CG4545-PA
           protein.
          Length = 622

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 175 HRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRET 71
           H  PA + D  PL P   +NE + VV    R+RET
Sbjct: 44  HTTPAKVTD--PLAPKLANNERILVVSVTERTRET 76


>AE014296-1023|AAF50736.2|  461|Drosophila melanogaster CG13287-PA
           protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = -2

Query: 298 LTDVP--PQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNR 125
           L D P  P ++SPP  + +  T+   ++ S S++SP  T  ++  +P D     PL P++
Sbjct: 159 LVDSPEAPSTSSPPPPMRSAFTKVASSSLSTSSSSPSTT--SRLESPVD-AGAPPLSPDQ 215

Query: 124 VS 119
           +S
Sbjct: 216 LS 217


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,081,800
Number of Sequences: 53049
Number of extensions: 507138
Number of successful extensions: 1355
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1663799760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)