Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0080.Seq
(479 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69883-6|CAA93744.2| 461|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z37139-5|CAA85490.1| 558|Caenorhabditis elegans Hypothetical pr... 29 2.3
U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical pr... 28 3.1
AF078788-1|AAC26965.2| 629|Caenorhabditis elegans Hypothetical ... 28 3.1
U13642-2|AAG00042.2| 430|Caenorhabditis elegans Abnormal growth... 27 5.3
AY052773-1|AAL14112.1| 430|Caenorhabditis elegans tRNA isopente... 27 5.3
AC006712-8|AAU20838.1| 450|Caenorhabditis elegans Hypothetical ... 27 5.3
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 27 7.0
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 27 9.3
>Z69883-6|CAA93744.2| 461|Caenorhabditis elegans Hypothetical
protein C27C12.2 protein.
Length = 461
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = -2
Query: 313 HLRYSLTDVPPQSNSPPGSVSNRITREF*TATSVSAT 203
HL SL + PQSNS P +V R+ R T TS S T
Sbjct: 248 HLGSSLQNEHPQSNSRPSTVIPRVQR---TNTSASLT 281
>Z37139-5|CAA85490.1| 558|Caenorhabditis elegans Hypothetical
protein C14B1.9 protein.
Length = 558
Score = 28.7 bits (61), Expect = 2.3
Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = -2
Query: 352 PREVSVLAELALGHLRYSLTDVPPQSNSPPGSVSNRI-TREF*TATSVSATSPLCTLGTK 176
P+++S+ ++G + ++P Q NSP +V N T + A S + ++ K
Sbjct: 252 PKKISLDKPKSVGSPSNAHNEIPSQKNSPKSAVKNETDTEDALMAKSGNLSTAAVMFKNK 311
Query: 175 -HRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 65
H +D P N ET+ ++ + ++ ++
Sbjct: 312 VHTLQCQFLDSHGNPQNTPDFETLSKILSEHFDKKELT 349
>U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical
protein C23H3.9d protein.
Length = 432
Score = 28.3 bits (60), Expect = 3.1
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -2
Query: 295 TDVPPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPP-NRVS 119
T P+S+S + R+ + T T +A S T +AP I DR P NR+S
Sbjct: 69 TTSEPRSHSRDARPTQRLPLTWSTVTPTAAPSQPIPTATSRKAPWYIKDRTAWPTYNRIS 128
Query: 118 NE 113
E
Sbjct: 129 AE 130
>AF078788-1|AAC26965.2| 629|Caenorhabditis elegans Hypothetical
protein ZC190.4 protein.
Length = 629
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = -2
Query: 187 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 53
+GT+ + DIID +P N +S++ + +++ R ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328
>U13642-2|AAG00042.2| 430|Caenorhabditis elegans Abnormal growth
rate protein 1 protein.
Length = 430
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = -1
Query: 293 RCTAPVKLPAWQCLEPDHAGVLNGDERFRH---VTTLHAWNETPCARRYYRPR 144
+C + W L+P LNGD+ F+ LH RR+YR R
Sbjct: 277 QCIGLKEFVPWLNLDPSERDTLNGDKLFKQGCDDVKLHTRQYARRQRRWYRSR 329
>AY052773-1|AAL14112.1| 430|Caenorhabditis elegans tRNA isopentenyl
transferase protein.
Length = 430
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = -1
Query: 293 RCTAPVKLPAWQCLEPDHAGVLNGDERFRH---VTTLHAWNETPCARRYYRPR 144
+C + W L+P LNGD+ F+ LH RR+YR R
Sbjct: 277 QCIGLKEFVPWLNLDPSERDTLNGDKLFKQGCDDVKLHTRQYARRQRRWYRSR 329
>AC006712-8|AAU20838.1| 450|Caenorhabditis elegans Hypothetical
protein Y119C1B.3 protein.
Length = 450
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 282 PSQTPRLAVSRTGSRGSFKRRRAFPPRHHSARLER 178
P++TP+ S S +R + FP HH RL+R
Sbjct: 409 PTRTPKQRRSSRIRSISDEREQLFPRHHHGRRLDR 443
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 226 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 110
T+ + TSP T+GT APA++ P N S+ T
Sbjct: 623 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTT 661
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 226 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 110
T+ + TSP T+GT APA++ P N S+ T
Sbjct: 679 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTT 717
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -3
Query: 273 TPRLAVSRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHR 139
+PR R +R S RRR PP R +R R P+ R
Sbjct: 221 SPRRGSPRRDTRRSPPRRRGSPPARGGDRRDRREDRRPVRDEKER 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,605,686
Number of Sequences: 27780
Number of extensions: 248553
Number of successful extensions: 688
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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