Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0080.Seq
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.0  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   3.9  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   3.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   6.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 83  SSLKNHYFHCFITYSVGRK 139
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 62  VGDRFARSSLKNHYFHCFI 118
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 62  VGDRFARSSLKNHYFHCFI 118
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = -3

Query: 315 DTCVIL*QMYRPSQTPRLAVSRTGSRGSFKRRRAFPPR 202
           D CV+     +   +P +   R G++ + +R    PP+
Sbjct: 606 DVCVLKTDTNQSCPSPPVTTKRDGTQETEERLPPLPPK 643


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 467 LFLAPLAKNSLY*RIDRPCFRSPY 396
           L+ +PL+  SLY    +P  +S Y
Sbjct: 266 LYYSPLSSRSLYYVNTKPFMKSEY 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,768
Number of Sequences: 438
Number of extensions: 3103
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)