Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0080.Seq
(479 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.30
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote... 29 1.6
At3g04750.1 68416.m00511 pentatricopeptide (PPR) repeat-containi... 28 2.8
At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo... 28 3.7
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 28 3.7
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 3.7
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 3.7
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 5.0
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 5.0
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 27 5.0
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 5.0
At4g39070.1 68417.m05533 zinc finger (B-box type) family protein... 27 6.5
At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine... 27 6.5
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si... 27 6.5
At3g16260.1 68416.m02051 metallo-beta-lactamase family protein 27 6.5
At1g64340.1 68414.m07291 hypothetical protein 27 6.5
At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA... 27 8.7
At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA... 27 8.7
At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA... 27 8.7
At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co... 27 8.7
At3g62370.1 68416.m07006 expressed protein 27 8.7
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.5 bits (68), Expect = 0.30
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = -2
Query: 280 QSNSPPGSVSNRITREF*TATS-VSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMK 104
Q + P V ++ F T V S LG +H PA +I+R P PP +S ++
Sbjct: 199 QPTADPERVKAQLKSMFDLDTEDVLLVSAKTGLGLEHVLPA-VIERIPPPPG-ISESPLR 256
Query: 103 VVVFQRRSRETISHLCYTSHV 41
+++F E +CY S V
Sbjct: 257 MLLFDSFFNEYKGVICYVSVV 277
>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
beta-ketoacyl-CoA synthase - Simmondsia
chinensis,PID:g1045614
Length = 451
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 326 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 439
LS R W RAK L+Q+ TH+ E T+Y+S ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317
>At3g04750.1 68416.m00511 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 661
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 472 GNFFWHLLLKTLYTKGSIGRAFAVPMRTEHLDQASF 365
GN+ W+ L+K G+ G A V R H D +SF
Sbjct: 165 GNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSF 200
>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase familiy protein
similar to SP|O14072 Cation-transporting ATPase 4 (EC
3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
accession IPR001757: ATPase, E1-E2 type; contains Pfam
profile PF00702: haloacid dehalogenase-like hydrolase
Length = 1179
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -2
Query: 460 WHLLLKTLYTKGSIG-RAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTD 290
+H+L+ L+T S+ + F + +DQA C P + S E+ H R +TD
Sbjct: 61 FHILV-LLFTTWSVDFKCFVQFSKVNSIDQADACKVTPAKFSGSKEVVPLHFRSQMTD 117
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -2
Query: 301 SLTDVPPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRV 122
S T PP S +PPG + + +A S ATSP ++ K +P P PP
Sbjct: 169 SPTTSPPGSTTPPGGAHSPKSS---SAVS-PATSPPGSMAPKSGSPVSPTTSPPAPPKST 224
Query: 121 S 119
S
Sbjct: 225 S 225
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 151 DRAPLPPNRVSNETMKVVVFQRRSRET 71
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 202 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 65
S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 142 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 32
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 142 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 32
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 282 PSQTPRLAVSRTGSRGSFKRRRAFPPRHHSARLERNTVR 166
P ++PR +VSR+ R S K P R R+ R+ VR
Sbjct: 563 PIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVR 601
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 190 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 95
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At4g39070.1 68417.m05533 zinc finger (B-box type) family protein
salt-tolerance protein - Arabidopsis thaliana,
PID:e224078
Length = 242
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 379 DQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSP 266
D+A+ C R V +LA HLR+SLT P ++P
Sbjct: 20 DEAALCNGCDRHVHFANKLAGKHLRFSLTS-PTFKDAP 56
>At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine
aminohydrolase, putative identical to cytidine deaminase
homolog DesA [Arabidopsis thaliana] GI:4836443, cytidine
deaminase 8 (CDA8) [Arabidopsis thaliana] GI:5080714;
similar to cytidine deaminase (CDD) [Arabidopsis
thaliana] GI:3046700; contains Pfam profile PF00383:
Cytidine and deoxycytidylate deaminase zinc-binding
Length = 293
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 406 AVPMR--TEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVP 284
A PMR H++ S+ F P+ +S L A+ H R ++ P
Sbjct: 2 AQPMRFMLNHIETESYGAFTPQNLSPLINRAIPHTRAQISGSP 44
>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 429
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -2
Query: 226 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKV 101
TA + T+ T+G + PA I L P+R++ + + +
Sbjct: 18 TAIATPTTTSATTIGVTYSTPASISGTVQLSPDRIAEKVVSM 59
>At3g16260.1 68416.m02051 metallo-beta-lactamase family protein
Length = 937
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 442 TLYTKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHL 308
+L++KGS+ ++ + D +S PF + VL E+ L HL
Sbjct: 719 SLFSKGSLMQSIYKRPSSPLTDNSSALPFLKKLKKVLGEMGLEHL 763
>At1g64340.1 68414.m07291 hypothetical protein
Length = 265
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 401 DCESTAYRSFSIKSF*QEVPEKVTT 475
DCEST Y SF + SF +++ +++
Sbjct: 124 DCESTLYDSFELNSFNRQLNSAISS 148
>At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 385
Score = 26.6 bits (56), Expect = 8.7
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -2
Query: 328 ELALGHLRYSLTDVPPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 149
++ GH +TD PP SNS NR+ AT++S + L L T R I+D
Sbjct: 2 DMKSGHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59
>At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 384
Score = 26.6 bits (56), Expect = 8.7
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -2
Query: 328 ELALGHLRYSLTDVPPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 149
++ GH +TD PP SNS NR+ AT++S + L L T R I+D
Sbjct: 2 DMKSGHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59
>At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 385
Score = 26.6 bits (56), Expect = 8.7
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -2
Query: 328 ELALGHLRYSLTDVPPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 149
++ GH +TD PP SNS NR+ AT++S + L L T R I+D
Sbjct: 2 DMKSGHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59
>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
contains Pfam profile: PF00534 Glycosyl transferases
group 1
Length = 981
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -2
Query: 463 FWHLLLKTLYTKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRY 302
F + LL LYT+ G + +P E + +A F P++ V+ + Y
Sbjct: 285 FHNYLLPILYTEFDAGNFYVIPGSPEEVCKAKNLEFPPQKDDVVISIVGSQFLY 338
>At3g62370.1 68416.m07006 expressed protein
Length = 361
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 248 PDHAGVLNGDERFRHVTTLHAWN 180
P G NG +RF H+ ++AWN
Sbjct: 171 PIDNGEGNGGDRFGHLVDIYAWN 193
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,086,801
Number of Sequences: 28952
Number of extensions: 236069
Number of successful extensions: 670
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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