Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0079.Seq
         (648 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IM68 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  
UniRef50_A5E6R8 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  

>UniRef50_Q8IM68 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 879

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -2

Query: 443 MNFIIK---NTLQICFLFLYIYTLSILKFTTNLN*AFYHSLYIGIKK 312
           M +II+   N + I F  LY+Y  +IL  T   N   Y+  YI IKK
Sbjct: 137 MKYIIESYTNNIDIIFFLLYLYVNNILNGTFVFNIQSYNEYYIKIKK 183


>UniRef50_A5E6R8 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 898

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +3

Query: 459 TSSTHAPTRTQHYAGRRLPSTQQILNLKSNFFDKVQRCIHIHTTRYENVHLMMSIQSRKR 638
           TS  +AP   + +A     +  Q++ L +N  DK+   +  H TRY+++ LM  I+  K 
Sbjct: 347 TSDDYAPL-IRIFAKNMKDANIQVVQLSANCTDKIANALGSHFTRYQSLILMPVIERTKE 405

Query: 639 Q 641
           +
Sbjct: 406 K 406


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,806,630
Number of Sequences: 1657284
Number of extensions: 11413636
Number of successful extensions: 35550
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35005
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)