Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0079.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    28   1.3  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.3  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    26   5.4  

>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 212 LRHINKVTSIVYDKVYHCNLYRYHITVLRFKKFT 313
           L  + K T I+ D +   N + YH++  + K+FT
Sbjct: 695 LSQLTKYTEIINDLITCLNSFLYHVSATKKKEFT 728


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 525 QILNLKSNFFDKVQRCIHIHTTRYENVHLMMSIQS 629
           +I   K+NF        H+H   YE++HL  S QS
Sbjct: 17  KIFTWKANFESIRINLQHMHLYHYEHIHLFTSSQS 51


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 446 EMNFIIKNTLQICFLFLYIYTLSILKF 366
           EM+FI+ NTL I    L+ + L I+K+
Sbjct: 142 EMDFILFNTLGIGAFILHDHLLGIIKY 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,539
Number of Sequences: 5004
Number of extensions: 53892
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)