Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0079.Seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    28   7.4  
04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402     28   7.4  
07_01_0954 - 8016804-8016905,8017409-8017469,8017543-8017649,801...    27   9.7  

>06_03_0912 +
           25896152-25896451,25896528-25897296,25897492-25897658,
           25898932-25901013,25901155-25901730,25904503-25905648,
           25907056-25908693
          Length = 2225

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 405 FVSIYLYSQYFEIYHQLKLSILS*LIHRHKEVNFLN 298
           ++  +L  QY +++   KL  L   IH+HKE+  LN
Sbjct: 563 YICEFLKLQYLDLHGCSKLKKLPDGIHKHKELQHLN 598


>04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402
          Length = 566

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 245 YDKVYHC-NLYRYHITVLRFKKFTSLCLCISYDKM 346
           YD VY   ++Y      L  ++ T+LC C++Y+K+
Sbjct: 400 YDGVYRALDIYLESHPTLTIEERTTLCRCLNYEKL 434


>07_01_0954 -
           8016804-8016905,8017409-8017469,8017543-8017649,
           8018278-8018382,8018460-8018546,8018631-8018711,
           8018872-8018944,8019288-8019400,8019695-8019788,
           8020060-8020115,8020212-8020295,8020384-8020476,
           8020592-8020765,8020956-8021099,8021225-8021380
          Length = 509

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 466 PRTRRHAHNTTPVGGCLQLNKY*ILNLIFSIKYNDVFTST 585
           P TR  A    PVGGC +L    + N I S K N ++  T
Sbjct: 91  PLTRTRAKPAVPVGGCYRLIDIPMSNCINS-KINKIYVLT 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,561,602
Number of Sequences: 37544
Number of extensions: 265736
Number of successful extensions: 445
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)