Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0079.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35372| Best HMM Match : SpoIIIAC (HMM E-Value=1.3)                  29   4.3  
SB_18244| Best HMM Match : Fukutin-related (HMM E-Value=3.7)           29   4.3  
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)                       28   5.7  
SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35)             28   7.5  
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_35372| Best HMM Match : SpoIIIAC (HMM E-Value=1.3)
          Length = 378

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 164 THVHSTQTKYMCRLSLLRHINKVTSIVYDKVYHCNLYRYHITVLRF 301
           TH H   T+Y   ++   H+      VY   YH  + RYH+ + R+
Sbjct: 30  THYHVYMTRYHVYMTRY-HVYMTRYHVYMTRYHVYMTRYHVYMTRY 74



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 164 THVHSTQTKYMCRLSLLRHINKVTSIVYDKVYHCNLYRYHITVLRF 301
           TH H   T Y   ++   H+      VY   YH  + RYH+ + R+
Sbjct: 23  THYHVYMTHYHVYMTRY-HVYMTRYHVYMTRYHVYMTRYHVYMTRY 67


>SB_18244| Best HMM Match : Fukutin-related (HMM E-Value=3.7)
          Length = 540

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 164 THVHSTQTKYMCRLSLLRHINKVTSIVYDKVYHCNLYRYHITVLRF 301
           TH H   T+Y   ++   H+      VY   YH  + RYH+ + R+
Sbjct: 30  THYHVYMTRYHVYMTRY-HVYMTRYHVYMTRYHVYMTRYHVYMTRY 74



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 164 THVHSTQTKYMCRLSLLRHINKVTSIVYDKVYHCNLYRYHITVLRF 301
           TH H   T Y   ++   H+      VY   YH  + RYH+ + R+
Sbjct: 23  THYHVYMTHYHVYMTRY-HVYMTRYHVYMTRYHVYMTRYHVYMTRY 67


>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
          Length = 1388

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 489  QHYAGRRLPSTQQILNLKSNFFDKVQRCIHIH 584
            Q+ A   LP+T  +LN   +F   + R IH+H
Sbjct: 1346 QYSAFFHLPTTGYLLNSLHSFLTTIHRAIHVH 1377


>SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35)
          Length = 1076

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 299  FKKFTSLCLCISYD-KMLNLSWW 364
            F+K   +C+ +SYD + L + WW
Sbjct: 950  FRKLLGVCILVSYDEEQLRVHWW 972


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 133  TGNNKNSKQNNTCSFNTNK 189
            T  N +S+  NTC FNTNK
Sbjct: 964  TKANASSRSRNTCLFNTNK 982


>SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 133 TGNNKNSKQNNTCSFNTNKI 192
           T N+KNS +NN   +N NKI
Sbjct: 112 TDNSKNSNRNNNDYYNNNKI 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,209,535
Number of Sequences: 59808
Number of extensions: 363351
Number of successful extensions: 822
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)