Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0079.Seq
         (648 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M98397-1|AAA28915.1|  816|Drosophila melanogaster steroid recept...    31   1.8  
AE013599-4031|AAZ52800.1|  278|Drosophila melanogaster CG33680-P...    29   7.2  

>M98397-1|AAA28915.1|  816|Drosophila melanogaster steroid receptor
           beta FTZ-F1 protein.
          Length = 816

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 133 TGNNKNSKQNNTCSFNTNKIHV*TKFVKTY 222
           +GNN +S  NN  + N N  HV TKF   Y
Sbjct: 58  SGNNTSSSSNNNNNNNDNDAHVLTKFEHEY 87


>AE013599-4031|AAZ52800.1|  278|Drosophila melanogaster CG33680-PA
           protein.
          Length = 278

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 110 LGNISLNNNT*LYYKHVRFELEDSLLQHF 24
           +GN  +NNN  LY K +   LE  L +HF
Sbjct: 182 VGNSLINNNQELYLKDIAPSLEHGLSKHF 210


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,143,983
Number of Sequences: 53049
Number of extensions: 520433
Number of successful extensions: 1284
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)