Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0079.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U00065-4|AAA50736.1|  103|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z93379-9|CAE11301.1|  354|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U53151-3|AAB37067.2|  388|Caenorhabditis elegans Serpentine rece...    28   6.6  

>U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical
           protein F57F4.2 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
 Frame = +2

Query: 122 GKH*LAITKIPNKTTHVHSTQTKYMCRLS--LLRHINKVTSIVYDKVYHCN--------- 268
           G H +  TK     +H+HS     MC L   ++ H  K+   V   ++            
Sbjct: 223 GPHRVIATKNEFLKSHIHSKLRNLMCMLHFFIVMHYIKILKFVLIAIFQSYIQFLKKTKY 282

Query: 269 -LYRYHITVLRFKKFTSLCLCISY 337
            LY  ++T+L FK F    +  SY
Sbjct: 283 ILYNCYLTILTFKNFREFEIVSSY 306


>U00065-4|AAA50736.1|  103|Caenorhabditis elegans Hypothetical
           protein D1044.4 protein.
          Length = 103

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 552 FDKVQRCIHIHTTRYENVH 608
           F+KV  C+H +T  Y NVH
Sbjct: 69  FEKVMPCVHTYTIIYGNVH 87


>Z93379-9|CAE11301.1|  354|Caenorhabditis elegans Hypothetical
           protein F21H7.14 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 27/98 (27%), Positives = 45/98 (45%)
 Frame = -2

Query: 647 FLLSFSALNRHH*VYVFISGSVDVNTSLYFIEKIRFKI*YLLS*RQPPTGVVLCACRRVR 468
           ++L  +  N H  +YV+I     +NT  +F+  I   + YL     PP  V +       
Sbjct: 200 YILISNTNNLHLVIYVYIPFFA-LNTLAHFLFHIWCTVYYLYI--APPKSVSMAT----- 251

Query: 467 G*CANLYEMNFIIKNTLQICFLFLYIYTLSILKFTTNL 354
                LY+ NF++   LQI  LF ++ TL ++    +L
Sbjct: 252 ----QLYQRNFLVGTLLQIFTLFSFM-TLPVILVAVSL 284


>U53151-3|AAB37067.2|  388|Caenorhabditis elegans Serpentine
           receptor, class r protein9 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 130 MFSFKDD-SATLV*IIIPNYTINMLDLN*KIRCCSIF 23
           +FSF DD S+ L+        +++LD + K +CCSIF
Sbjct: 9   VFSFDDDKSSELLGPFRHFLKVSLLDCSAKTKCCSIF 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,142,588
Number of Sequences: 27780
Number of extensions: 296620
Number of successful extensions: 609
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)