Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0078.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    31   0.006
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   0.85 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.5  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   4.5  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   4.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 31.5 bits (68), Expect = 0.006
 Identities = 15/51 (29%), Positives = 19/51 (37%)
 Frame = -1

Query: 577 TDDMLRKRVSITADAVHRQRGAQCNYELFNRNNFSIRYWSWNYRGCWHQTC 425
           TD    K   +  D   R+R          R+NF   +  WNY  CW   C
Sbjct: 716 TDSAGDKYSRLVGDGSARRRFVVAVVGFLRRHNFKGLHLDWNYPVCWQSNC 766



 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/25 (32%), Positives = 9/25 (36%)
 Frame = -1

Query: 499  ELFNRNNFSIRYWSWNYRGCWHQTC 425
            +    NNF      W Y  CW   C
Sbjct: 1930 DFIETNNFDGLDLDWEYPKCWQVDC 1954


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 10/44 (22%)
 Frame = -1

Query: 343 FVTTSPCREWVICA----------PAAFLGCGSRFSGSLSESNP 242
           F  TSPC+   +C           P  F G    FSG   +SNP
Sbjct: 341 FCATSPCQNGGVCTTIHAGHKCTCPEGFYGKNCEFSGYDCDSNP 384


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 178 RHLKDASPVLDHAICKSYPDSSKLTTSDARP 86
           RH+K A PV+  + C     S++L      P
Sbjct: 68  RHIKGAIPVVSLSTCSMLCGSTQLWPQPTGP 98


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -1

Query: 550 SITADAVHRQRGAQCNYELFNRNNFSIRYWSWNY 449
           ++ ADA  R   A+   E F   NF      W Y
Sbjct: 111 AVAADATKRATMAKSALEFFETYNFDGLDVDWEY 144


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = -1

Query: 478 FSIRYWSWNYRGCWHQ 431
           +++ YW   Y   WH+
Sbjct: 117 YAVYYWRQQYEDFWHR 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,893
Number of Sequences: 336
Number of extensions: 2887
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)