Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0078.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc...    27   2.7  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   3.6  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    25   6.3  
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    25   8.4  

>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
           Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 133 CRSHGQVPATHLSNVCLINFRW*FLRLPWLSRVTGNQGSIPRGSLRNGYHI 285
           C+   +    H+      NF+  +  LPW  R+ G Q SI   +++NG H+
Sbjct: 71  CQGQNKESLIHMEEDASTNFKLRYYVLPWSRRLQGYQ-SI---TVQNGSHV 117


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -1

Query: 388 LIPITRPRKSPVSLFFVTTSPCREWVICAPAAFL 287
           +IPI +  KS +SL F+T SPC  + IC+  A L
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICSLRARL 75


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 265 GSLSESNPDSPLPVTTMVVAETTI 194
           GSLS++    P+P+ ++V+ E +I
Sbjct: 135 GSLSKAGFSKPMPIQSLVIPEASI 158


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 505 NY-ELFNRNNFSIRYWSWNYRGCWHQT 428
           NY E +  ++F +RYW+ N    W+QT
Sbjct: 259 NYPEYYQLSSFEVRYWN-NLLPQWYQT 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,631
Number of Sequences: 5004
Number of extensions: 47636
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)