Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0078.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0054 - 6398829-6399047,6399470-6399676,6399858-6400557,640...    29   2.1  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   4.9  
03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058     28   6.5  
11_04_0081 - 13320073-13320639                                         27   8.6  

>02_02_0054 -
           6398829-6399047,6399470-6399676,6399858-6400557,
           6400927-6401120
          Length = 439

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 119 IWITFADRMVKYRRRIFQMSALSTFDGSFCDYHGCHG*RGIRVRF 253
           +WITFA  MV    +   +++  T DG     H   G  GI V+F
Sbjct: 158 LWITFAKSMVIRLTQELLVASDKTIDGRGAQVHIARGGAGITVQF 202


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -1

Query: 565 LRKRVSITA---DAVHRQRGAQCNYELFNRNNFSIRYWSWNYRGC 440
           +R   ++TA   D      G QC      R+N S RYW W   GC
Sbjct: 63  VRDAAAVTAYREDCPFLDPGFQCISN--GRSNSSFRYWRWQPHGC 105


>03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058
          Length = 339

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -1

Query: 394 SVLIPITRPRKSPVSLFFVTTSPCREWVICAPAAFLGCGSRFSGSLSESN 245
           S+  P T PR  PV          +E    +PA + G G     +LSE N
Sbjct: 183 SLFSPPTTPRSPPVGAAAAAAYHFQEEYCSSPADYAGGGGDLLAALSEDN 232


>11_04_0081 - 13320073-13320639
          Length = 188

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 236 GIRVRFREGA*ETATTSKEGSRRANYPLPARGGSDEK*R 352
           G R R R+G  + A     G+RR  Y   ARGG+  + R
Sbjct: 47  GTRTRRRDGDGDGAAVVARGARRRWYARAARGGTRRRRR 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,567,268
Number of Sequences: 37544
Number of extensions: 351549
Number of successful extensions: 813
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)