Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0078.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)               29   2.2  
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   3.8  
SB_595| Best HMM Match : CH (HMM E-Value=0)                            28   5.0  
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 231  NGESGFDSEREPEKRLPHPRKAAGAQIT-HSRHGEVVTKNNDTGLLRGLVIGMST 392
            +G SGF   R P+ R    R AA + +T  S   +   +  D  L  G ++G+ T
Sbjct: 1316 SGSSGFTDTRRPKLRFGKKRPAATSSVTAESDESKPTKRAADQPLFSGAMMGVET 1370


>SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)
          Length = 550

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -1

Query: 433 QTCPPIVPR*NI*SVLI--PITRPRKSPVSLFFVTTSPCREWVICAPAAFLGCGSRFSGS 260
           +  P IVP  N  +  +  P+T+     V    VT SP +E   C+P+  L   +  +G+
Sbjct: 83  ENSPTIVPVQNQQNTPLYSPLTQVENGQVYYAIVTNSPSQETQCCSPSPELAPSTPTNGN 142

Query: 259 LSESNPD 239
              S+P+
Sbjct: 143 AQVSSPE 149


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 508 CNYELFNRNNFSIRYWSWNYRGCWH 434
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_595| Best HMM Match : CH (HMM E-Value=0)
          Length = 905

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +1

Query: 256 RGSLRNGYHIQGRQQA--RKLPTPGT 327
           RG++++GY+   +QQA  RK+P PG+
Sbjct: 333 RGTIQSGYYFCKQQQAARRKIPKPGS 358


>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2324

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +3

Query: 231  NGESGFDSER---EPEKRLPHPRKAAGAQITHSRHGEVVTKNNDT 356
            N ++G  S R    PE+  PHPR       + S +G    K +DT
Sbjct: 1110 NPDTGMPSPRFGGHPEEPAPHPRNVFSGFPSSSGYGTSTAKTSDT 1154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,755,673
Number of Sequences: 59808
Number of extensions: 395861
Number of successful extensions: 990
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)