Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0078.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75955-2|CAB00112.1|  355|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U40954-7|AAB52654.2|  145|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U22832-1|AAA64507.1|  293|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z75955-2|CAB00112.1|  355|Caenorhabditis elegans Hypothetical
           protein R07B7.3 protein.
          Length = 355

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 592 LERRLTDDMLRKRVSITADAVHRQRGAQCNYELFNRNNFSIR 467
           L  +L  + LRKR +IT   V R+RG      L  R NF+++
Sbjct: 102 LVNKLVKNALRKRTNITTVPVVRKRGGVAASTLAARRNFALK 143


>U40954-7|AAB52654.2|  145|Caenorhabditis elegans Hypothetical
           protein ZK813.1 protein.
          Length = 145

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 228 GNGESGFDSEREPEKRLPHPRKAAGAQITHSRHGEVVTKNNDT 356
           G G  G+D+     K   H R+  G +  H RHG    +++D+
Sbjct: 30  GYGNPGYDNGNPFYKPRKHHRRRHGRRGRHGRHGRHGRRHSDS 72


>U22832-1|AAA64507.1|  293|Caenorhabditis elegans Hypothetical
           protein C09F5.2 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/64 (25%), Positives = 22/64 (34%)
 Frame = +3

Query: 144 WSSTGDASFKCLPYQLXXXXXXXXXXXXGNGESGFDSEREPEKRLPHPRKAAGAQITHSR 323
           W ++G A     PY L            G   +G  S+      L  P K AG  +    
Sbjct: 38  WKNSGGAGDPITPYPLPQFFLQPPSTAGGGSRNGVGSKEGSVTSLRMPLKKAGDDVDLGH 97

Query: 324 HGEV 335
            GE+
Sbjct: 98  RGEL 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,528,772
Number of Sequences: 27780
Number of extensions: 277836
Number of successful extensions: 646
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)