Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0078.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.2  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 97  PKSLILMNLDNFCRSHGQVPAT 162
           P+ L  +NL + CR HG  PAT
Sbjct: 430 PRELEAVNLGSACRIHGS-PAT 450


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 284  SKEGSRRANYPLPARGGSDEK*RYG 358
            +K  S+ AN P PA GG   + + G
Sbjct: 1014 AKPQSQEANKPKPATGGKGTRPKRG 1038


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 321 RHGEVVTKNNDT 356
           R+ E+V KNNDT
Sbjct: 336 RNIEIVAKNNDT 347


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 532 VHRQRGAQCNYELFNR 485
           VH + GA C   ++NR
Sbjct: 65  VHEKGGASCGPNVYNR 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,501
Number of Sequences: 438
Number of extensions: 3835
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)