Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0078.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    33   0.19 
At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase...    30   1.0  
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.0  
At2g21780.1 68415.m02589 expressed protein                             29   1.8  

>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 382 PITRPRKSPVSLFFVTTSPCREWVICAPAAFLGCGSRFSGSLSESNPDSPLPVT 221
           PI+ P KSP +    TTSP +   + +P          S S    +P SP PV+
Sbjct: 24  PISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77


>At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase C
           (PLC2) identical to phosphoinositide specific
           phospholipase C(AtPLC2) GI:857374 [Arabidopsis thaliana]
          Length = 581

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = -1

Query: 265 GSLSESNPDSPLPVTTMVVAETTIES**GRHLKDASPVLDHAICKSYPDSSKLTTSDARP 86
           G ++E     P  V  + ++E  +E    ++ K       H + + YP  +++T+S+  P
Sbjct: 329 GGITECLKVDPDKVRRLSLSEEQLEKAAEKYAKQIVRFTQHNLLRIYPKGTRVTSSNYNP 388

Query: 85  SVDW 74
            V W
Sbjct: 389 LVGW 392


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 121 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 26
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At2g21780.1 68415.m02589 expressed protein
          Length = 112

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 234 GESGFDSEREPEKRLPHPRKAAGAQITHSRHGEVVTKNNDTG 359
           GE+GF  E  PE        AA  Q+ H    E V+ ++ TG
Sbjct: 6   GETGFSRESAPEIVFSETDMAAAEQLMHLSEEETVSCSSSTG 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,748,866
Number of Sequences: 28952
Number of extensions: 262421
Number of successful extensions: 599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)