Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0077.Seq
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    27   0.13 
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    25   0.54 
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    25   0.54 
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    24   0.94 
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    24   0.94 
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   2.9  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.9  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   3.8  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   3.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   3.8  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    22   5.0  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -2

Query: 194 HADHHTL-MAGPSDDRGEYGARSIISCETGLAHTGAIVY 81
           H DH  +    P+DDRG   A + +  ET   H  A  Y
Sbjct: 160 HVDHQPVPYLTPADDRGRVAAAAAMVAETASFHHDAAGY 198


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 159 RRSRGIRREEHHLLRNRP 106
           +   G+R+  HHL++N+P
Sbjct: 78  KHKEGVRKVLHHLIKNKP 95


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 275 IVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 370
           +VT+W + E+I++     +L V     PV+LT
Sbjct: 158 VVTDWVNFERIYYKLTKKKLSVFFGNKPVILT 189


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 159 RRSRGIRREEHHLLRNRP 106
           +   G+R+  HHL+ N+P
Sbjct: 78  KHKEGVRKVIHHLIENKP 95


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 159 RRSRGIRREEHHLLRNRP 106
           +   G+R+  HHL+ N+P
Sbjct: 78  KHKEGVRKVIHHLIENKP 95


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 146 PLDRRKAPPSGCDGRHGTERLVR 214
           P DR    P+GC  R G +   R
Sbjct: 144 PFDRVVCGPNGCPRRRGRQTYTR 166


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 146 PLDRRKAPPSGCDGRHGTERLVR 214
           P DR    P+GC  R G +   R
Sbjct: 203 PFDRVVCGPNGCPRRRGRQTYTR 225


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 120 LRNRP-CTYRSHCLLPTRQLPRRT 52
           ++ +P C+  + C L TR+LP  T
Sbjct: 477 IKGQPYCSLPNSCALTTRELPGET 500


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 120 LRNRP-CTYRSHCLLPTRQLPRRT 52
           ++ +P C+  + C L TR+LP  T
Sbjct: 484 IKGQPYCSLPNSCALTTRELPGET 507


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 313 MPNLLHVIPVSDDSVFDGVLRVRIPLLLCASSPTYESF 200
           +P++  +IP  DD+  D      I +LL     +Y ++
Sbjct: 355 LPDISEIIPTGDDTTMDSNDMTAIYVLLINIFASYFAY 392


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 313 MPNLLHVIPVSDDSVFDGVLRVRIPLLLCASSPTYESF 200
           +P++  +IP  DD+  D      I +LL     +Y ++
Sbjct: 355 LPDISEIIPTGDDTTMDSNDMTAIYVLLINIFASYFAY 392


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 313 MPNLLHVIPVSDDSVFDGVLRVRIPLLLCASSPTYESF 200
           +P++  +IP  DD+  D      I +LL     +Y ++
Sbjct: 355 LPDISEIIPTGDDTTMDSNDMTAIYVLLINIFASYFAY 392


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 313 MPNLLHVIPVSDDSVFDGVLRVRIPLLLCASSPTYESF 200
           +P++  +IP  DD+  D      I +LL     +Y ++
Sbjct: 355 LPDISEIIPTGDDTTMDSNDMTAIYVLLINIFASYFAY 392


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 191 HGTERLVRRRRGTEQKRYPDPQY 259
           +GT + +RR   T Q +  DP Y
Sbjct: 116 NGTNKNMRRLSTTTQNKNDDPSY 138


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -1

Query: 159 RRSRGIRREEHHLLRNRP 106
           +   G+R+   HL++N+P
Sbjct: 77  KHKEGVRKVIRHLIKNKP 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,934
Number of Sequences: 336
Number of extensions: 3676
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)