Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0077.Seq
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 7e-47
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 7e-47
SB_56| Best HMM Match : Actin (HMM E-Value=0) 184 7e-47
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 184 7e-47
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 7e-47
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 1e-33
SB_54| Best HMM Match : Actin (HMM E-Value=0) 106 1e-23
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 4e-23
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 90 2e-18
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 77 9e-15
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 60 1e-09
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 60 2e-09
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 8e-05
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 44 8e-05
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 41 0.001
SB_35006| Best HMM Match : PT (HMM E-Value=3.4) 34 0.11
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 34 0.11
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 0.61
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.61
SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 30 1.4
SB_27518| Best HMM Match : RWD (HMM E-Value=0.015) 30 1.4
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 1.9
SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88) 29 3.3
SB_58222| Best HMM Match : HS1_rep (HMM E-Value=0) 29 3.3
SB_43322| Best HMM Match : Peptidase_S9 (HMM E-Value=0.032) 29 4.3
SB_29911| Best HMM Match : 7tm_1 (HMM E-Value=0.0026) 28 5.7
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 28 5.7
SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_8818| Best HMM Match : I-set (HMM E-Value=0) 28 5.7
SB_10982| Best HMM Match : Glyco_hydro_56 (HMM E-Value=2.5e-21) 28 7.5
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23) 28 7.5
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_7573| Best HMM Match : Nucleoporin (HMM E-Value=0.21) 27 9.9
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 184 bits (447), Expect = 7e-47
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +2
Query: 254 QYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 433
+YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 69 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 128
Query: 434 NTPAMYVAIQAVLSLYASGRTTGIV 508
N+PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 129 NSPAMYVAIQAVLSLYASGRTTGIV 153
Score = 141 bits (342), Expect = 4e-34
Identities = 66/71 (92%), Positives = 68/71 (95%)
Frame = +3
Query: 51 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 230
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKRGILTLNTP 263
SKRGILTL P
Sbjct: 61 SKRGILTLKYP 71
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/47 (63%), Positives = 32/47 (68%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGYS 648
+DSGDGV HTVPIYEGYALP+AI MKILTERGYS
Sbjct: 154 MDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYS 200
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 184 bits (447), Expect = 7e-47
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +2
Query: 254 QYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 433
+YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 68 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 127
Query: 434 NTPAMYVAIQAVLSLYASGRTTGIV 508
N+PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 128 NSPAMYVAIQAVLSLYASGRTTGIV 152
Score = 138 bits (335), Expect = 3e-33
Identities = 64/69 (92%), Positives = 67/69 (97%)
Frame = +3
Query: 57 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 236
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 237 RGILTLNTP 263
RGILTL P
Sbjct: 62 RGILTLKYP 70
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/47 (63%), Positives = 32/47 (68%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGYS 648
+DSGDGV HTVPIYEGYALP+AI MKILTERGYS
Sbjct: 153 MDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 199
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 184 bits (447), Expect = 7e-47
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +2
Query: 254 QYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 433
+YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 68 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 127
Query: 434 NTPAMYVAIQAVLSLYASGRTTGIV 508
N+PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 128 NSPAMYVAIQAVLSLYASGRTTGIV 152
Score = 140 bits (338), Expect = 1e-33
Identities = 65/69 (94%), Positives = 67/69 (97%)
Frame = +3
Query: 57 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 236
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 237 RGILTLNTP 263
RGILTL P
Sbjct: 62 RGILTLKYP 70
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/47 (63%), Positives = 32/47 (68%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGYS 648
+DSGDGV HTVPIYEGYALP+AI MKILTERGYS
Sbjct: 153 MDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 199
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 184 bits (447), Expect = 7e-47
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +2
Query: 254 QYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 433
+YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 69 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 128
Query: 434 NTPAMYVAIQAVLSLYASGRTTGIV 508
N+PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 129 NSPAMYVAIQAVLSLYASGRTTGIV 153
Score = 146 bits (353), Expect = 2e-35
Identities = 67/71 (94%), Positives = 69/71 (97%)
Frame = +3
Query: 51 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 230
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKRGILTLNTP 263
SKRGILTL P
Sbjct: 61 SKRGILTLKYP 71
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/47 (63%), Positives = 32/47 (68%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGYS 648
+DSGDGV HTVPIYEGYALP+AI MKILTERGYS
Sbjct: 154 MDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 200
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 184 bits (447), Expect = 7e-47
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +2
Query: 254 QYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 433
+YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 69 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 128
Query: 434 NTPAMYVAIQAVLSLYASGRTTGIV 508
N+PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 129 NSPAMYVAIQAVLSLYASGRTTGIV 153
Score = 141 bits (342), Expect = 4e-34
Identities = 64/71 (90%), Positives = 68/71 (95%)
Frame = +3
Query: 51 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 230
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 231 SKRGILTLNTP 263
SKRGILTL P
Sbjct: 61 SKRGILTLKYP 71
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/20 (75%), Positives = 17/20 (85%), Gaps = 2/20 (10%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYE--GYA 561
+DSGDGV HTVPIYE GY+
Sbjct: 154 MDSGDGVSHTVPIYEERGYS 173
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 140 bits (338), Expect = 1e-33
Identities = 64/69 (92%), Positives = 67/69 (97%)
Frame = +3
Query: 57 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 236
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 237 RGILTLNTP 263
RGILTL P
Sbjct: 62 RGILTLKYP 70
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +2
Query: 395 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 508
N + M +IMFETFN+PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 115
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/47 (63%), Positives = 32/47 (68%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGYS 648
+DSGDGV HTVPIYEGYALP+AI MKILTERGYS
Sbjct: 116 MDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYS 162
Score = 47.6 bits (108), Expect = 9e-06
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +2
Query: 254 QYPIEHGIVTNWDDMEKIWHHTF 322
+YPIEHGIVTNWDDMEKI TF
Sbjct: 68 KYPIEHGIVTNWDDMEKIMFETF 90
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 106 bits (255), Expect = 1e-23
Identities = 48/70 (68%), Positives = 59/70 (84%)
Frame = +2
Query: 302 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 481
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 482 ASGRTTGIVW 511
ASGRTTG V+
Sbjct: 2189 ASGRTTGTVF 2198
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +3
Query: 75 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 176
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = +1
Query: 511 DSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGYS 648
D GDGV HTVP+Y+GY LP+A +++TERGYS
Sbjct: 2199 DCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYS 2244
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 105 bits (251), Expect = 4e-23
Identities = 48/94 (51%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
Frame = +2
Query: 233 QKRYP-DPQYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREK 406
Q RY + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREK
Sbjct: 63 QLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREK 122
Query: 407 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 508
M ++MFE + +Y+AIQAVL+LYA G TG+V
Sbjct: 123 MIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVV 156
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +3
Query: 69 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 242
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 243 ILTLNTP 263
+L +N P
Sbjct: 67 MLEVNYP 73
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGYS 648
+DSGDGV H P+YEG+ALP+ +K++ RGY+
Sbjct: 157 IDSGDGVTHICPVYEGFALPHLTRRLDIAGRDITKYLIKLMLLRGYA 203
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 89.8 bits (213), Expect = 2e-18
Identities = 37/53 (69%), Positives = 48/53 (90%)
Frame = +2
Query: 350 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 508
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+V
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVV 178
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/23 (65%), Positives = 22/23 (95%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAI 576
+D+GDGV H+VPIYEG+A+P++I
Sbjct: 179 LDAGDGVSHSVPIYEGFAMPHSI 201
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 77.4 bits (182), Expect = 9e-15
Identities = 32/95 (33%), Positives = 58/95 (61%)
Frame = +2
Query: 260 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 439
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 440 PAMYVAIQAVLSLYASGRTTGIVWTPATVSSTPYP 544
PA ++ +VL+ +A+GR+ G+V ++ P
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVP 97
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Frame = +3
Query: 39 Y*FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-S 209
Y FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 691 YSFKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYK 750
Query: 210 YVGDEAQSKRGILTLN 257
GD A +K G++ LN
Sbjct: 751 KYGDAAVAKSGVMHLN 766
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = +2
Query: 416 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVW 511
IMFE FN+PA+YVAIQAVLSLYASGRTTG+V+
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVF 32
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/46 (58%), Positives = 30/46 (65%)
Frame = +1
Query: 511 DSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGYS 648
DSGDGV H VPIYEGYALP+AI MK++TERGYS
Sbjct: 33 DSGDGVSHNVPIYEGYALPHAILRLDLAGRDLTDYLMKLMTERGYS 78
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +3
Query: 60 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 176
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = -2
Query: 173 MAGPSDDRGEYGARSIISCETGLAHTGAIVYYQRGNFLV 57
MA +DD GE G+ SI+S ETGLAHTGAI+ Q + +V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 44.4 bits (100), Expect = 8e-05
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 254 QYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 367
++PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +2
Query: 305 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 484
I H F + L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYS 571
Query: 485 SGRTTGIVWTPATVSSTPYPST 550
+GIV T + ST
Sbjct: 572 YSAVSGIVEQRVTDGTDEIHST 593
>SB_35006| Best HMM Match : PT (HMM E-Value=3.4)
Length = 325
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = -3
Query: 268 FDGVLRVRIPLLLCASSPTYESFCPMPTITP*WRGLPT 155
+DGV+ +++ LLL +SSP + S P+ TP +GL T
Sbjct: 273 YDGVIDIKLNLLLLSSSPMFLSAVPIAPHTPTLQGLHT 310
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTER 639
+DSGDGV H +P+ EGY + I ++L ER
Sbjct: 66 IDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITFFVQQLLRER 109
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 31.9 bits (69), Expect = 0.46
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +2
Query: 380 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVWTPATVSSTPYPSTRDT 559
+ PK ++ ++F F P M +A++ + A+G TGI++T V + S R
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGIIFTERHVFNNTEISDRSL 233
Query: 560 HFLT 571
T
Sbjct: 234 KIKT 237
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 148 GNTARGASSPAKPALHIPEPLSTT 77
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 31.5 bits (68), Expect = 0.61
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 392 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 508
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 148 GNTARGASSPAKPALHIPEPLSTT 77
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 432 STRPPCTSPSKPCSRCTRPVVPPVSCGLRRRCLPH-RTHLRGIRTSLRHPASGLGRSRPX 608
+T PC++ PCS T P++ G R L H R L R +L H LG +RP
Sbjct: 44 ATLAPCSATLAPCSALTCPML-----GHTRPTLGHTRPTLGHTRPTLGHTRPMLGHTRP- 97
Query: 609 RLPHEDP 629
L H P
Sbjct: 98 MLGHTHP 104
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 148 GNTARGASSPAKPALHIPEPLSTT 77
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -3
Query: 262 GVLRVRIPLLLCASSPTYESFCPMPTITP*WRGLPTI 152
G L +P A+SP Y S P+PT TP PTI
Sbjct: 1210 GALFTPLPHETSATSPPYTSASPVPTTTPSASSSPTI 1246
>SB_27518| Best HMM Match : RWD (HMM E-Value=0.015)
Length = 277
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 456 PSKPCSRCTRPVVPP 500
P++PCS CT+P +PP
Sbjct: 220 PTEPCSLCTKPALPP 234
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 260 PIEHGIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANRE 403
P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 134 PFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 260 PIEHGIVTNWDDMEKIWHHTFYNE 331
P + G + NWD ++IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 63 EVAALVVDNGSGMCKAGFAGDDAPRAV 143
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)
Length = 841
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 219 DEAQSKRGILTLNTPSNTESSLTGMTWRRFGIIPSTMSSVSPP 347
D +Q + + T+ +PS + ++TG + R P+ S SPP
Sbjct: 554 DTSQDEEVVTTIGSPSTSGVTITGTSLRGDSQAPAVSGSQSPP 596
>SB_58222| Best HMM Match : HS1_rep (HMM E-Value=0)
Length = 727
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 253 RVRIPLLLCASSPTYESFCPMPTITP 176
RVR L L S+P Y S CP +TP
Sbjct: 601 RVRARLSLHVSAPDYHSTCPRSIVTP 626
>SB_43322| Best HMM Match : Peptidase_S9 (HMM E-Value=0.032)
Length = 216
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 433 QHARHVRRHPSRALAVRVRSYHRYRVDSGDGVFHTVPIYEG 555
QH RHV S ++ S +Y D D + +P YEG
Sbjct: 25 QHERHVGHGKSEGERAQIDSLQKYVRDIFDHIDQIIPKYEG 65
>SB_29911| Best HMM Match : 7tm_1 (HMM E-Value=0.0026)
Length = 197
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 534 VEDTVAGVHTIPVVRPDAYSESTAWMATYMAGVLNVSNMIWVIFSLL 394
V T+ + VV D Y + +ATY+ L VSN++ V+ +L
Sbjct: 17 VVTTLGNAVVVVVVYKDPYKQLKKNLATYLIAGLAVSNLLLVVGEIL 63
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 148 GNTARGASSPAKPALHIPEPLSTT 77
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 148 GNTARGASSPAKPALHIPEPLSTT 77
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 420 CSKHSTRPPCTSPSKPCSRCTRPVVPPVSCG 512
CS+HS +P C PSK C + V+PP + G
Sbjct: 1521 CSEHSCKPEC--PSKCCMK----VLPPTTLG 1545
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 441 PPCTSPSKPCSRCTRPVVPPVSC 509
PP P P T P +PP SC
Sbjct: 973 PPLPPPPPPVQTTTAPTLPPASC 995
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -2
Query: 266 RWGIEGQDTSFALC--LVSYVRVFLSHADHHTLMAGPSDDRGEYGARSIISCE 114
RWG DT +V VR + + TL +GP DDRGE + ++ E
Sbjct: 1917 RWGYPNIDTLLEQLSDIVQVVRAWPQYVRGGTL-SGPLDDRGEAAKKMVLLTE 1968
>SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 179 CDGRHGTERLVRR-RRGTEQKRYPDPQYPIEHGIVTNWDDMEKIWHHT 319
CD TER VRR +R K P P + GI T DD EK HT
Sbjct: 257 CDKDFKTERSVRRHKRTVHNKSCPKPAVSTQ-GIQTTHDD-EKPERHT 302
>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
Length = 2787
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 573 GVRKCVSLVDGYGVEDTVAGVHTIPVVRPD 484
G+ KCV+ D +G T A +H PVV+PD
Sbjct: 1158 GMYKCVAKND-FGEASTSATLHINPVVKPD 1186
>SB_10982| Best HMM Match : Glyco_hydro_56 (HMM E-Value=2.5e-21)
Length = 201
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +2
Query: 239 RYPDPQYPIEHGI-VTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 415
+ PDPQY +G+ V +W+ +WH + ++ + + ++ P P ++ +
Sbjct: 18 KIPDPQY---NGLAVIDWEGWRPVWHRNWDSKKLYQTKSIEIARSQYPDWPLDKLVELAK 74
Query: 416 IMFETFNTPAMYVAIQAVLSLYASGR 493
FE + M I+ +L G+
Sbjct: 75 SQFEDSSRRLMEATIRLGRTLRPHGK 100
>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
Length = 1153
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Frame = +2
Query: 338 VAPEEHPVLLTEAPLNPK-----ANREKMTQIMFETFNTPAMYV--AIQAVLSLYASGRT 496
V P P + A ++P ++ + + + T NT A AI A +++ S
Sbjct: 723 VVPSAKPATASSAVVSPTPVAGISSAASLVKQLIATVNTQAGATVRAIPATVTIAGSSPI 782
Query: 497 TGIVWTPATVSSTPYPSTRDTHFL 568
+G T +++STP P+T T L
Sbjct: 783 SGASTTQLSLNSTPVPTTAVTSTL 806
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 163 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 53
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_7573| Best HMM Match : Nucleoporin (HMM E-Value=0.21)
Length = 928
Score = 27.5 bits (58), Expect = 9.9
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -3
Query: 259 VLRVRIPLLLCASS-PTYESFC----PMPTITP*WRGLPTIEGNTARGASSPAKPALHIP 95
V VR+P+L+C SS T+ C IT + L I ++A+ S P++P P
Sbjct: 375 VFPVRLPMLVCVSSVVTHVGVCFQHQCYKCITDCLQRLLAIRQSSAQSPSLPSRPG---P 431
Query: 94 EPLSTTNAAT 65
P NA T
Sbjct: 432 PPTPDPNALT 441
>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 436 HARHVRRHPSRALAVRVRSYHRYRVDSGDGVFHTVPI 546
+ARH R PSR +R+ Y + D DG+ ++ I
Sbjct: 42 NARHPRVEPSRCRGLRLLDYCSDKFDDDDGLTDSLDI 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,528,746
Number of Sequences: 59808
Number of extensions: 546871
Number of successful extensions: 2083
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2077
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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