Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0077.Seq
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 184 6e-47
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 183 8e-47
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 183 8e-47
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 182 2e-46
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 181 3e-46
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 181 3e-46
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 181 3e-46
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 181 4e-46
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 181 4e-46
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 166 1e-41
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 160 8e-40
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 159 2e-39
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 117 8e-27
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 97 9e-21
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 91 6e-19
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 74 7e-14
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 62 3e-10
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 58 5e-09
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 53 2e-07
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 38 0.004
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 38 0.004
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 34 0.094
At5g29020.1 68418.m03592 hypothetical protein 29 2.7
At1g62420.1 68414.m07042 expressed protein contains Pfam profile... 28 4.7
At3g16260.1 68416.m02051 metallo-beta-lactamase family protein 28 6.1
At3g08760.1 68416.m01018 protein kinase family protein contains ... 24 6.9
At5g06610.1 68418.m00747 expressed protein contains Pfam profile... 27 8.1
At4g01535.1 68417.m00199 hypothetical protein 27 8.1
At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE... 27 8.1
At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive eff... 27 8.1
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 184 bits (447), Expect = 6e-47
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +2
Query: 254 QYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 433
+YPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 70 KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
Query: 434 NTPAMYVAIQAVLSLYASGRTTGIV 508
NTPAMYVAIQAVLSLYASGRTTGIV
Sbjct: 130 NTPAMYVAIQAVLSLYASGRTTGIV 154
Score = 124 bits (298), Expect = 7e-29
Identities = 57/68 (83%), Positives = 61/68 (89%)
Frame = +3
Query: 60 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 239
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 240 GILTLNTP 263
GILTL P
Sbjct: 65 GILTLKYP 72
Score = 62.5 bits (145), Expect = 2e-10
Identities = 30/47 (63%), Positives = 32/47 (68%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGYS 648
+DSGDGV HTVPIYEGYALP+AI MKILTERGYS
Sbjct: 155 LDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 201
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 183 bits (446), Expect = 8e-47
Identities = 83/85 (97%), Positives = 84/85 (98%)
Frame = +2
Query: 254 QYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 433
+YPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 70 KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
Query: 434 NTPAMYVAIQAVLSLYASGRTTGIV 508
NTPAMYVAIQAVLSLYASGRTTGIV
Sbjct: 130 NTPAMYVAIQAVLSLYASGRTTGIV 154
Score = 124 bits (298), Expect = 7e-29
Identities = 57/68 (83%), Positives = 61/68 (89%)
Frame = +3
Query: 60 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 239
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 240 GILTLNTP 263
GILTL P
Sbjct: 65 GILTLKYP 72
Score = 62.5 bits (145), Expect = 2e-10
Identities = 30/47 (63%), Positives = 32/47 (68%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGYS 648
+DSGDGV HTVPIYEGYALP+AI MKILTERGYS
Sbjct: 155 LDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYS 201
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 183 bits (446), Expect = 8e-47
Identities = 83/85 (97%), Positives = 84/85 (98%)
Frame = +2
Query: 254 QYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 433
+YPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 70 KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
Query: 434 NTPAMYVAIQAVLSLYASGRTTGIV 508
NTPAMYVAIQAVLSLYASGRTTGIV
Sbjct: 130 NTPAMYVAIQAVLSLYASGRTTGIV 154
Score = 124 bits (298), Expect = 7e-29
Identities = 57/68 (83%), Positives = 61/68 (89%)
Frame = +3
Query: 60 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 239
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 240 GILTLNTP 263
GILTL P
Sbjct: 65 GILTLKYP 72
Score = 62.5 bits (145), Expect = 2e-10
Identities = 30/47 (63%), Positives = 32/47 (68%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGYS 648
+DSGDGV HTVPIYEGYALP+AI MKILTERGYS
Sbjct: 155 LDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYS 201
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 182 bits (442), Expect = 2e-46
Identities = 82/85 (96%), Positives = 84/85 (98%)
Frame = +2
Query: 254 QYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 433
+YPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 70 KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
Query: 434 NTPAMYVAIQAVLSLYASGRTTGIV 508
N PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 130 NVPAMYVAIQAVLSLYASGRTTGIV 154
Score = 124 bits (298), Expect = 7e-29
Identities = 57/68 (83%), Positives = 61/68 (89%)
Frame = +3
Query: 60 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 239
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 240 GILTLNTP 263
GILTL P
Sbjct: 65 GILTLKYP 72
Score = 60.9 bits (141), Expect = 7e-10
Identities = 29/46 (63%), Positives = 31/46 (67%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGY 645
+DSGDGV HTVPIYEGYALP+AI MKILTERGY
Sbjct: 155 LDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGY 200
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 181 bits (441), Expect = 3e-46
Identities = 80/85 (94%), Positives = 85/85 (100%)
Frame = +2
Query: 254 QYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 433
+YPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 70 KYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
Query: 434 NTPAMYVAIQAVLSLYASGRTTGIV 508
N+PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 130 NSPAMYVAIQAVLSLYASGRTTGIV 154
Score = 119 bits (287), Expect = 1e-27
Identities = 53/68 (77%), Positives = 60/68 (88%)
Frame = +3
Query: 60 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 239
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQSKR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 240 GILTLNTP 263
GILTL P
Sbjct: 65 GILTLKYP 72
Score = 58.0 bits (134), Expect = 5e-09
Identities = 27/46 (58%), Positives = 31/46 (67%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGY 645
+DSGDGV HTVPIYEG++LP+AI MKILTERGY
Sbjct: 155 LDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKILTERGY 200
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 181 bits (441), Expect = 3e-46
Identities = 80/85 (94%), Positives = 85/85 (100%)
Frame = +2
Query: 254 QYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 433
+YPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 70 KYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
Query: 434 NTPAMYVAIQAVLSLYASGRTTGIV 508
N+PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 130 NSPAMYVAIQAVLSLYASGRTTGIV 154
Score = 119 bits (287), Expect = 1e-27
Identities = 53/68 (77%), Positives = 60/68 (88%)
Frame = +3
Query: 60 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 239
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQSKR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 240 GILTLNTP 263
GILTL P
Sbjct: 65 GILTLKYP 72
Score = 58.0 bits (134), Expect = 5e-09
Identities = 27/46 (58%), Positives = 31/46 (67%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGY 645
+DSGDGV HTVPIYEG++LP+AI MKILTERGY
Sbjct: 155 LDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKILTERGY 200
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 181 bits (441), Expect = 3e-46
Identities = 80/85 (94%), Positives = 85/85 (100%)
Frame = +2
Query: 254 QYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 433
+YPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREKMTQIMFETF
Sbjct: 70 KYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
Query: 434 NTPAMYVAIQAVLSLYASGRTTGIV 508
N+PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 130 NSPAMYVAIQAVLSLYASGRTTGIV 154
Score = 119 bits (287), Expect = 1e-27
Identities = 53/68 (77%), Positives = 60/68 (88%)
Frame = +3
Query: 60 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 239
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQSKR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 240 GILTLNTP 263
GILTL P
Sbjct: 65 GILTLKYP 72
Score = 58.0 bits (134), Expect = 5e-09
Identities = 27/46 (58%), Positives = 31/46 (67%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGY 645
+DSGDGV HTVPIYEG++LP+AI MKILTERGY
Sbjct: 155 LDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKILTERGY 200
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 181 bits (440), Expect = 4e-46
Identities = 81/85 (95%), Positives = 83/85 (97%)
Frame = +2
Query: 254 QYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 433
+YPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMTQIMFETF
Sbjct: 70 KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETF 129
Query: 434 NTPAMYVAIQAVLSLYASGRTTGIV 508
N PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 130 NAPAMYVAIQAVLSLYASGRTTGIV 154
Score = 124 bits (298), Expect = 7e-29
Identities = 57/68 (83%), Positives = 61/68 (89%)
Frame = +3
Query: 60 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 239
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 240 GILTLNTP 263
GILTL P
Sbjct: 65 GILTLKYP 72
Score = 62.5 bits (145), Expect = 2e-10
Identities = 30/47 (63%), Positives = 32/47 (68%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGYS 648
+DSGDGV HTVPIYEGYALP+AI MKILTERGYS
Sbjct: 155 LDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYS 201
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 181 bits (440), Expect = 4e-46
Identities = 81/85 (95%), Positives = 83/85 (97%)
Frame = +2
Query: 254 QYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 433
+YPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMTQIMFETF
Sbjct: 70 KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETF 129
Query: 434 NTPAMYVAIQAVLSLYASGRTTGIV 508
N PAMYVAIQAVLSLYASGRTTGIV
Sbjct: 130 NAPAMYVAIQAVLSLYASGRTTGIV 154
Score = 124 bits (298), Expect = 7e-29
Identities = 57/68 (83%), Positives = 61/68 (89%)
Frame = +3
Query: 60 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 239
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 240 GILTLNTP 263
GILTL P
Sbjct: 65 GILTLKYP 72
Score = 62.5 bits (145), Expect = 2e-10
Identities = 30/47 (63%), Positives = 32/47 (68%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGYS 648
+DSGDGV HTVPIYEGYALP+AI MKILTERGYS
Sbjct: 155 LDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYS 201
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 166 bits (403), Expect = 1e-41
Identities = 71/85 (83%), Positives = 80/85 (94%)
Frame = +2
Query: 254 QYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 433
+YPIEHG+V+NWDDMEKIWHHTFYNELR+ PEEHP+LLTEAPLNPK NREKMTQIMFE+F
Sbjct: 71 KYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPLNPKVNREKMTQIMFESF 130
Query: 434 NTPAMYVAIQAVLSLYASGRTTGIV 508
P+MY+ IQAVLSLY+SGRTTGIV
Sbjct: 131 AFPSMYIGIQAVLSLYSSGRTTGIV 155
Score = 114 bits (274), Expect = 5e-26
Identities = 50/68 (73%), Positives = 61/68 (89%)
Frame = +3
Query: 60 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 239
+E A+V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH+GVMVGM +KD++VGDEAQ++R
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQARR 65
Query: 240 GILTLNTP 263
GIL+L P
Sbjct: 66 GILSLKYP 73
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/47 (55%), Positives = 30/47 (63%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGYS 648
+DSGDGV HTVPIYEGYALP+AI KI+ ERGY+
Sbjct: 156 LDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYLTKIMMERGYT 202
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 160 bits (388), Expect = 8e-40
Identities = 69/84 (82%), Positives = 79/84 (94%)
Frame = +2
Query: 257 YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 436
YP+EHG+V+NWDDMEKIW+HTFY+ELRVAPEEHPVLLTEAPLNPKA+REKMTQIMFETF
Sbjct: 26 YPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPVLLTEAPLNPKADREKMTQIMFETFA 85
Query: 437 TPAMYVAIQAVLSLYASGRTTGIV 508
P+MY+ +QA LSL+ASGRTTG V
Sbjct: 86 VPSMYIGMQAALSLHASGRTTGTV 109
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/47 (51%), Positives = 29/47 (61%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGYS 648
+DSGDGV + VPIYEG ALP+AI MKI+ ERGY+
Sbjct: 110 LDSGDGVSYIVPIYEGSALPHAILRLDLAGRHLTNYLMKIMMERGYT 156
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +3
Query: 183 MVGMGQKDSYVGDEAQSKRGILTLNTP 263
MVGM + D +VGD+A+++ GILTL+ P
Sbjct: 1 MVGMNENDLFVGDDAEARSGILTLDYP 27
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 159 bits (385), Expect = 2e-39
Identities = 69/83 (83%), Positives = 78/83 (93%)
Frame = +2
Query: 260 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 439
P+EHGIV NWDDMEKIWH+TFYNELRV PEEHPVLLTEAP NPKANREKMTQIMFE+F+
Sbjct: 61 PMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHPVLLTEAPYNPKANREKMTQIMFESFDV 120
Query: 440 PAMYVAIQAVLSLYASGRTTGIV 508
PAMYV++Q+VL LY+SGRTTG+V
Sbjct: 121 PAMYVSMQSVLYLYSSGRTTGVV 143
Score = 70.5 bits (165), Expect = 9e-13
Identities = 33/63 (52%), Positives = 42/63 (66%)
Frame = +3
Query: 75 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 254
+V D G GM +AGFAGD+AP+ VFP +VGRPR G+ +SYVG+E + R ILTL
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPRD-----GLNPNESYVGEEGHANRDILTL 58
Query: 255 NTP 263
P
Sbjct: 59 KDP 61
Score = 48.0 bits (109), Expect = 5e-06
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGYS 648
+D G+ V HTVP+YEGYALP+ I ++I+TERGY+
Sbjct: 144 LDLGERVSHTVPVYEGYALPHGILRLDLGGRDLTDYLIEIMTERGYT 190
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 117 bits (281), Expect = 8e-27
Identities = 49/94 (52%), Positives = 66/94 (70%)
Frame = +2
Query: 227 TEQKRYPDPQYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 406
+E + D YP+ +GIV NWDDME +W H FYNEL++ P + +LLT+ PLNP NREK
Sbjct: 60 SELRHQLDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREK 119
Query: 407 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 508
M + MFE +N +++ IQAVL+LYA G TG+V
Sbjct: 120 MIETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLV 153
Score = 54.4 bits (125), Expect = 6e-08
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Frame = +3
Query: 75 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGIL 248
+V DNG+G K GFAG++ P +VFP +VGRP R++ ++ KD VG+ R L
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCSELRHQL 66
Query: 249 TLNTP 263
+N P
Sbjct: 67 DINYP 71
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERGYS 648
+DSGDGV H VP+ +GY+ P+ + +L+ RGY+
Sbjct: 154 IDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITAYLVDLLSRRGYA 200
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 97.1 bits (231), Expect = 9e-21
Identities = 47/102 (46%), Positives = 64/102 (62%)
Frame = +2
Query: 194 GTERLVRRRRGTEQKRYPDPQYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 373
G E L + R + + YPIEHG V +WD ME+ W +N LR PE+H LLTE
Sbjct: 71 GDEALAKSRSSSTHNLH----YPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDHYFLLTE 126
Query: 374 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 499
+PL P +RE +I+FETFN P +Y+A+ +VL+L A+G TT
Sbjct: 127 SPLTPPESREYTGEILFETFNVPGLYIAVNSVLAL-AAGYTT 167
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 72 ALVVDNGSGMCKAGFAGDDAPRAVFPSIV 158
A+V+DNG+G K GFAG+ P + P++V
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVV 36
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 508 VDSGDGVFHTVPIYEGYALPYAIXXXXXXXXXXXXXXMKILTERG 642
VD GDG H VP+ EGY + I +++ ERG
Sbjct: 177 VDVGDGATHVVPVAEGYVIGSCIKSIPIAGKDVTLFIQQLMRERG 221
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 91.1 bits (216), Expect = 6e-19
Identities = 38/83 (45%), Positives = 57/83 (68%)
Frame = +2
Query: 260 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 439
PI+ GIV++WD ++ IW H F + L + P EHP+LL E PLN + REK ++MFE +
Sbjct: 94 PIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKV 153
Query: 440 PAMYVAIQAVLSLYASGRTTGIV 508
PA+++A VL+ +A+GR T +V
Sbjct: 154 PALFMAKNPVLTSFATGRATSLV 176
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = +3
Query: 60 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 161
+EV+A+VVD GS CKAG+AG+DAP+AVFPS++G
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIG 38
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 74.1 bits (174), Expect = 7e-14
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +2
Query: 260 PIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFN 436
PIE G++ +WD ME + + Y L E +L T+ PKA RE++ Q+MFETFN
Sbjct: 57 PIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFN 116
Query: 437 TPAMYVAIQAVLSLYASGRTTG 502
Y + QAVLSLYA GR +G
Sbjct: 117 VSGFYASEQAVLSLYAVGRISG 138
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 72 ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGR 164
ALVVD GS KAG A D +P + PS + R
Sbjct: 3 ALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKR 34
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 62.1 bits (144), Expect = 3e-10
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = +2
Query: 260 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 406
P + GIVT+WD ++ +W H F N L + P EHP+LL E PLN + REK
Sbjct: 88 PTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAEPPLNSQQQREK 136
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/69 (43%), Positives = 43/69 (62%)
Frame = +3
Query: 60 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 239
+EV+A+VVD GS CKAG+AG+DAP+AVFPS+VG G+ + + E+ ++
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDGNGMDIDDAANTTEDAKESDKEK 64
Query: 240 GILTLNTPS 266
G L T S
Sbjct: 65 GKRKLYTGS 73
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 58.0 bits (134), Expect = 5e-09
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +2
Query: 260 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 439
PI+ G + N D +IW H F + L +AP +LLTEAPL+ + + +++FE F
Sbjct: 64 PIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDELVFEDFGF 123
Query: 440 PAMYVA-IQAVLSLYASGR 493
++Y+A Q+++ LY + R
Sbjct: 124 SSLYIAHPQSLVHLYEASR 142
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 75 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 167
+V+DNG G+ KAG G+ P V P+ + +P
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKP 35
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 52.8 bits (121), Expect = 2e-07
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Frame = +2
Query: 251 PQYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 427
P+ P + +V ++ ME I + F + +HP+L+TE NP +R KM +++FE
Sbjct: 82 PRSPFDSNVVYQFEIMEYILDYAFDRLGANGSGIDHPILITECACNPVQSRSKMAELLFE 141
Query: 428 TFNTPAMYVAIQAVLS-----LYASGRTTGIVWTP--ATVSSTPY 541
T+ PA+ + A S L+ + GIV P T S P+
Sbjct: 142 TYGVPAVAFGVDAAFSYKYNQLHGICKKDGIVLCPGFTTTHSIPF 186
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +3
Query: 75 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD 221
+V+DNG+ + G+AG+ PR VF +IV RPRH+ G+ + VGD
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKAT----GETVTIVGD 66
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Frame = +2
Query: 317 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMYVAIQA 466
T + ++V P P++++ PL + KA+R ++ +F N PA+ QA
Sbjct: 182 TIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQA 240
Query: 467 VLSLYASGRTTGIV 508
VL+LYA+ RT+GIV
Sbjct: 241 VLALYAARRTSGIV 254
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Frame = +2
Query: 317 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMYVAIQA 466
T + ++V P P++++ PL + KA+R ++ +F N PA+ QA
Sbjct: 182 TIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQA 240
Query: 467 VLSLYASGRTTGIV 508
VL+LYA+ RT+GIV
Sbjct: 241 VLALYAARRTSGIV 254
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 33.9 bits (74), Expect = 0.094
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -3
Query: 196 PMPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 59
P P I P RGL +G T+ +SSPA+P + +P +ST + TS+
Sbjct: 290 PTPDIKP-TRGLIVYQGATS--SSSPAEPLMPVPNDMSTAHRFTSN 332
>At5g29020.1 68418.m03592 hypothetical protein
Length = 847
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 450 TSPSKPCSRCTRPVVPPV-SCGLRRRCLPHRTHLRGIRTSLRHPASGL 590
++P+KPC T PV PP + G R+R P + RG+ + P+ L
Sbjct: 26 SNPAKPCGSRTLPVNPPYPTTGKRKRADPPKPS-RGLSPNPTDPSGVL 72
>At1g62420.1 68414.m07042 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 465
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 159 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLNTPSNTESSLTGMTWRRFG 311
G R + + M ++VGD + SKR ++ ++ L +W RFG
Sbjct: 84 GEERMRILSATMEVAGTFVGDISSSKRHLMAFLRNKGFDAGLCKSSWERFG 134
>At3g16260.1 68416.m02051 metallo-beta-lactamase family protein
Length = 937
Score = 27.9 bits (59), Expect = 6.1
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = -2
Query: 266 RWGIEGQDTSFALCLVSYVRVFLSHADHHTLMAGPSDDRGEYGARSIISCETGLAHTGAI 87
R+G+EG D A+ + + + HADHHT +A R R ++ GLAH AI
Sbjct: 615 RYGLEGADE--AVRNLRCIWISHIHADHHTGLARILARR-----RELLK---GLAHEPAI 664
Query: 86 VYYQRG--NFLVAHLEL 42
V R NFL A+ L
Sbjct: 665 VVGPRSLKNFLDAYQRL 681
>At3g08760.1 68416.m01018 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 557
Score = 23.8 bits (49), Expect(2) = 6.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 276 SSLTGMTWRRFGIIPSTMSSVSPPRNIPSFS 368
SSL + W + P + S SPP PS S
Sbjct: 482 SSLNTIIWTPASVPPRSSFSPSPPPRRPSVS 512
Score = 22.2 bits (45), Expect(2) = 6.9
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +3
Query: 438 RPPCTSPSKPCSRCTRPVVPPVSCG----LRRRCLPHRTHLRGIRTSL 569
R P SP++ + PV PP +C + R + + G RTSL
Sbjct: 507 RRPSVSPTRGRTLVFPPVFPPRACSSLEEMAREEVRRSSSASGRRTSL 554
>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 368
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 172 WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHI 50
WR P + + A+GA P + AL +PL+ ++ +S+ +
Sbjct: 167 WRYTPWLGDHAAKGAIRPLRRALQGLDPLTISSVFSSAQFV 207
>At4g01535.1 68417.m00199 hypothetical protein
Length = 137
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 8 LRTCHLFNNTILIQDVRRGSCRVGSRQWL 94
+ + +L NT +++D + +C GS+ WL
Sbjct: 13 IESLNLLKNTTVLEDQGKWNCEFGSKLWL 41
>At2g31510.1 68415.m03850 IBR domain-containing protein /
ARIADNE-like protein ARI7 (ARI7) identical to
ARIADNE-like protein ARI7 [Arabidopsis thaliana]
GI:29125028; contains similarity to Swiss-Prot:Q94981
ariadne-1 protein (Ari-1) [Drosophila melanogaster];
contains Pfam profile PF01485: IBR domain
Length = 562
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 459 SKPCSRCTRPVVPPVSCGLRRRCLP 533
SKPC RC RP+ C + C P
Sbjct: 292 SKPCPRCKRPIEKNQGC-MHMTCTP 315
>At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive
effector-related similar to Endonuclease sen1
(Swiss-Prot:Q92355) [Schizosaccharomyces pombe]; similar
to tRNA-splicing endonuclease positive effector
(Swiss-Prot:Q00416) [Saccharomyces cerevisiae]
Length = 1090
Score = 27.5 bits (58), Expect = 8.1
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Frame = +2
Query: 332 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGI-- 505
L +PE+ P + P P + +FN P + AI A+G ++G+
Sbjct: 433 LNPSPEQFPSYEEQTPATPDCFTTSFVDHLHRSFNAPQL-AAIHWAAMHTAAGTSSGVKK 491
Query: 506 --VWTPATVSSTPYPSTRDTH 562
W P T+ P P T TH
Sbjct: 492 QEPW-PFTLVQGP-PGTGKTH 510
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,182,852
Number of Sequences: 28952
Number of extensions: 357978
Number of successful extensions: 1186
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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