Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0076.Seq
         (528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      24   0.95 
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          23   2.2  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.2  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           23   2.2  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    22   3.8  
AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esteras...    22   3.8  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      22   3.8  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   5.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   5.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.9  

>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 23.8 bits (49), Expect = 0.95
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +1

Query: 283 RNSCWSGPKRQSQSERSFGRHSSYYFVREV 372
           RN  + GP  ++  +  +  H+  YF+R++
Sbjct: 352 RNFYYGGPNSENNLDNFYLIHTDTYFLRDI 381


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +2

Query: 167 YSYWRKNRPCQRGNSTISDSDCPYYQSYGHYIFITVAPVVT 289
           Y Y+  N+         SD +CP Y +  +   +   P VT
Sbjct: 33  YEYYENNQALPPITYPPSDWNCPQYNAPPYMSSVLQLPTVT 73


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 170 SYWRKNRPCQRGNSTIS 220
           ++WRKN P    N+T S
Sbjct: 386 NHWRKNNPNDNRNNTSS 402


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +2

Query: 167 YSYWRKNRPCQRGNSTISDSDCPYYQSYGHYIFITVAPVVT 289
           Y Y+  N+         SD +CP Y +  +   +   P VT
Sbjct: 24  YEYYENNQALPPITYPPSDWNCPQYNAPPYMSSVLQLPTVT 64


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/30 (23%), Positives = 17/30 (56%)
 Frame = +1

Query: 283 RNSCWSGPKRQSQSERSFGRHSSYYFVREV 372
           R+  + GP  ++  +  +  H+  YF+R++
Sbjct: 352 RDFYYGGPNSENNLDNFYLIHTDTYFLRDI 381


>AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esterase
           protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/30 (23%), Positives = 17/30 (56%)
 Frame = +1

Query: 283 RNSCWSGPKRQSQSERSFGRHSSYYFVREV 372
           R+  + GP  ++  +  +  H+  YF+R++
Sbjct: 354 RDFYYGGPNSENNLDNFYLIHTDTYFLRDI 383


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/30 (23%), Positives = 17/30 (56%)
 Frame = +1

Query: 283 RNSCWSGPKRQSQSERSFGRHSSYYFVREV 372
           R+  + GP  ++  +  +  H+  YF+R++
Sbjct: 354 RDFYYEGPNSENNLDNFYLIHTDTYFLRDI 383


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 259 YFYHCSPCRNSCWSGP 306
           Y Y   P  N  WSGP
Sbjct: 258 YCYRPYPVYNQWWSGP 273


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -2

Query: 176 STNTEKSKFSSSNSVVETSDGASASRESSAEDTKSSNS 63
           + N   +  SSS        G SAS+    +D  SS S
Sbjct: 74  TNNVPSNGLSSSGPFSSIGGGISASKRQRTDDWLSSPS 111


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/35 (20%), Positives = 16/35 (45%)
 Frame = +2

Query: 158 IFQYSYWRKNRPCQRGNSTISDSDCPYYQSYGHYI 262
           I +   W  ++   R +  ++   CP+   Y H++
Sbjct: 212 ITKLEQWNHSKVHIREDKRLTCPKCPFITEYKHHL 246


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,018
Number of Sequences: 336
Number of extensions: 2031
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)