Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0076.Seq
(528 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 21 5.9
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 21 5.9
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 5.9
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 21 7.8
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 21 7.8
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 21 7.8
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 21 7.8
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 21 7.8
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 21 7.8
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 21 7.8
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 7.8
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 21 7.8
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 21.4 bits (43), Expect = 5.9
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +2
Query: 176 WRKNRPCQRGNSTISDSDCPYYQSYGHYIF 265
W QRG + S P+Y + H IF
Sbjct: 590 WPSTSQIQRGVNAAIRSQEPFYITEPHQIF 619
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.4 bits (43), Expect = 5.9
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -1
Query: 471 SKDR-QYSXDXRSKSDAYGRTGRHRCLLKQGQRKDLTDKVIRTMPTKT 331
S++R Q S + YG+T + R + + + K+I ++ KT
Sbjct: 264 SREREQKSYKNEREYRKYGKTSKERSRDRMERERSKEPKIISSLSNKT 311
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.4 bits (43), Expect = 5.9
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -3
Query: 418 SDGT-APLLTQTRTAKRPHGQSNTNYADQNSVRSDSAASDQT 296
+DG +PL + R + SN D R++ A D+T
Sbjct: 308 ADGAVSPLRREKDRGSREYPTSNATDTDGTKERTEEVALDRT 349
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/41 (19%), Positives = 23/41 (56%)
Frame = -3
Query: 358 SNTNYADQNSVRSDSAASDQTSKSYDRGYSDKNIVPIALVV 236
+N NY++ N+ +++ ++ Y+ Y ++ VP+ + +
Sbjct: 87 NNYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPI 127
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/41 (19%), Positives = 23/41 (56%)
Frame = -3
Query: 358 SNTNYADQNSVRSDSAASDQTSKSYDRGYSDKNIVPIALVV 236
+N NY++ N+ +++ ++ Y+ Y ++ VP+ + +
Sbjct: 87 NNYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPI 127
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/41 (19%), Positives = 23/41 (56%)
Frame = -3
Query: 358 SNTNYADQNSVRSDSAASDQTSKSYDRGYSDKNIVPIALVV 236
+N NY++ N+ +++ ++ Y+ Y ++ VP+ + +
Sbjct: 87 NNYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPI 127
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/41 (19%), Positives = 23/41 (56%)
Frame = -3
Query: 358 SNTNYADQNSVRSDSAASDQTSKSYDRGYSDKNIVPIALVV 236
+N NY++ N+ +++ ++ Y+ Y ++ VP+ + +
Sbjct: 87 NNYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPI 127
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/41 (19%), Positives = 23/41 (56%)
Frame = -3
Query: 358 SNTNYADQNSVRSDSAASDQTSKSYDRGYSDKNIVPIALVV 236
+N NY++ N+ +++ ++ Y+ Y ++ VP+ + +
Sbjct: 87 NNYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPI 127
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/41 (19%), Positives = 23/41 (56%)
Frame = -3
Query: 358 SNTNYADQNSVRSDSAASDQTSKSYDRGYSDKNIVPIALVV 236
+N NY++ N+ +++ ++ Y+ Y ++ VP+ + +
Sbjct: 87 NNYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPI 127
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/41 (19%), Positives = 23/41 (56%)
Frame = -3
Query: 358 SNTNYADQNSVRSDSAASDQTSKSYDRGYSDKNIVPIALVV 236
+N NY++ N+ +++ ++ Y+ Y ++ VP+ + +
Sbjct: 87 NNYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPI 127
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.0 bits (42), Expect = 7.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 364 GQSNTNYADQNSVRSDSAASDQTSKSYDRGY 272
G SNT Q+ S S+ S +++S GY
Sbjct: 16 GYSNTCSNSQSQRSSGSSISRNSNRSESSGY 46
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 21.0 bits (42), Expect = 7.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 364 GQSNTNYADQNSVRSDSAASDQTSKSYDRGY 272
G SNT Q+ S S+ S +++S GY
Sbjct: 16 GYSNTCSNSQSQRSSGSSISRNSNRSESSGY 46
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,434
Number of Sequences: 438
Number of extensions: 2366
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -