Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0075.Seq
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)               31   0.51 
SB_44793| Best HMM Match : ENT (HMM E-Value=3.4)                       31   0.68 
SB_23505| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_52823| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)                      28   6.3  

>SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)
          Length = 1263

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +1

Query: 367  EIYETPGDVELLAGIWIERPMEGGYVPPTAACIINKQLSLTMKADR 504
            E+Y +  DV+L  G   E  +EGG V  T A II  Q  +    DR
Sbjct: 1127 EVYPSVDDVDLWVGGLAEEHVEGGCVGETFARIIAMQFKVLRDGDR 1172


>SB_44793| Best HMM Match : ENT (HMM E-Value=3.4)
          Length = 305

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 32  DEDFKYVGKKMVTDLSLHTDFLMRDKNLAKMTRGTYY 142
           DE+ K +  K+VTD ++HTDF++ +  +   TR   Y
Sbjct: 211 DEETKEILMKIVTDSTVHTDFVIENFRIRPNTRIVAY 247


>SB_23505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 365 KKFTKPLVTWNSWQESGLKDLWREVTFLQP 454
           K FT  L++ N ++   LK  W+++ FLQP
Sbjct: 2   KHFTDTLISANIFEGKKLKYTWQKIEFLQP 31


>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1565

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 361  LQEIYETPGDVELLAGIWI----ERPMEGGYVPPTAACIINKQLSLTMKADR 504
            L  +Y   G VE  A +W+    E P++G  V PT  CI+  Q       DR
Sbjct: 1126 LDRVYN--GSVEF-ADLWVSGLAENPVKGASVGPTFLCILRSQFRRLRDGDR 1174


>SB_52823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +2

Query: 332 NSLTWIELKVCKKFTKPLVTWNSWQESGLKDLWREVTFLQPQLVS*TNNCLSL*KLTDIV 511
           NSL  I L     +  P + + SW+    K L  +  F          +   + K++D V
Sbjct: 177 NSLVAISLMSVNAYIHPPIFYGSWKNWDQKPLKEKPLFYHGLS---EESAKIMDKVSDEV 233

Query: 512 *EIGQTLRFQCP 547
            EIG+ ++ QCP
Sbjct: 234 VEIGKAIQRQCP 245


>SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)
          Length = 1582

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 420 KTYGGRLRSSNRSLYHKQTTVSHYES*QTLYERSDRPYAFNVRSAGGNKKS 572
           ++YGG +RS   ++     TV  Y      Y  + R Y   VRS GG  +S
Sbjct: 83  RSYGGTVRSYGGTVRSYGGTVRSYGGTVRSYGGTVRSYGGTVRSYGGTVRS 133



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 420 KTYGGRLRSSNRSLYHKQTTVSHYES*QTLYERSDRPYAFNVRSAGGNKKS 572
           ++YGG +RS   ++     TV  Y      Y  + R Y   VRS GG  +S
Sbjct: 90  RSYGGTVRSYGGTVRSYGGTVRSYGGTVRSYGGTVRSYGGTVRSYGGTVRS 140



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 420 KTYGGRLRSSNRSLYHKQTTVSHYES*QTLYERSDRPYAFNVRSAGGNKKS 572
           ++YGG +RS   ++     TV  Y      Y  + R Y   VRS GG  +S
Sbjct: 97  RSYGGTVRSYGGTVRSYGGTVRSYGGTVRSYGGTVRSYGGTVRSYGGTVRS 147



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 420 KTYGGRLRSSNRSLYHKQTTVSHYES*QTLYERSDRPYAFNVRSAGGNKKS 572
           ++YGG +RS   ++     TV  Y      Y  + R Y   VRS GG  +S
Sbjct: 104 RSYGGTVRSYGGTVRSYGGTVRSYGGTVRSYGGTVRSYGGTVRSYGGTVRS 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,490,744
Number of Sequences: 59808
Number of extensions: 398093
Number of successful extensions: 803
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)