Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0075.Seq
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    26   0.31 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    26   0.31 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    26   0.31 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    26   0.31 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.8  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 426 YGGRLRSSNRSLYHKQTTVSHYE 494
           Y  RLR SNRS Y     + HY+
Sbjct: 118 YDPRLRYSNRSQYEFLNAIHHYD 140


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 426 YGGRLRSSNRSLYHKQTTVSHYE 494
           Y  RLR SNRS Y     + HY+
Sbjct: 118 YDPRLRYSNRSQYEFLNAIHHYD 140


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 426 YGGRLRSSNRSLYHKQTTVSHYE 494
           Y  RLR SNRS Y     + HY+
Sbjct: 169 YDPRLRYSNRSQYEFLNAIHHYD 191


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 426 YGGRLRSSNRSLYHKQTTVSHYE 494
           Y  RLR SNRS Y     + HY+
Sbjct: 118 YDPRLRYSNRSQYEFLNAIHHYD 140


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 201 PNPLSQMAGSTALSLSPPA 145
           PNP    A S++ S SPPA
Sbjct: 513 PNPRIASAPSSSTSSSPPA 531


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 224  LTAADLRKNQLSKFHLTSTT*NCAMMSK 307
            LTAA   +N+  K H+T TT +C+  S+
Sbjct: 944  LTAATCDQNKAVKKHIT-TTIDCSTQSE 970


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,902
Number of Sequences: 438
Number of extensions: 3657
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)