Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0074.Seq
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30590.1 68414.m03742 RNA polymerase I specific transcription...    30   1.0  

>At1g30590.1 68414.m03742 RNA polymerase I specific transcription
           initiation factor RRN3 family protein weak similarity to
           RNA polymerase I transcription factor RRN3 [Homo
           sapiens] GI:7670100; contains Pfam profile PF05327: RNA
           polymerase I specific transcription initiation factor
           RRN3
          Length = 604

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = -2

Query: 281 NNVKRLFVIILYNIRNYVISIY*YVFSSYLHYVYYSID*LFLK*KEICILGTIYSILKTC 102
           + +  +F I+  +  NY+++ Y   FS +L +   S+D      +    L  IY    TC
Sbjct: 297 DRLDEVFEILFKSFENYILNTYKTKFSQFLMFYACSLDPENCGVRFASKLLDIYLSSNTC 356

Query: 101 VFEKLSTDAYLGN 63
              ++S  AYL +
Sbjct: 357 RLTRMSAVAYLAS 369


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,462,824
Number of Sequences: 28952
Number of extensions: 177901
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)