Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0073.Seq
         (538 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...   127   1e-28
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    42   0.007
UniRef50_UPI0000E4A923 Cluster: PREDICTED: similar to angiotensi...    33   3.1  
UniRef50_A1SDR0 Cluster: Regulatory protein GntR, HTH; n=1; Noca...    32   9.6  
UniRef50_Q95QJ4 Cluster: Putative uncharacterized protein; n=2; ...    32   9.6  
UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1; ...    32   9.6  
UniRef50_Q22Y67 Cluster: Putative uncharacterized protein; n=1; ...    32   9.6  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score =  127 bits (307), Expect = 1e-28
 Identities = 58/59 (98%), Positives = 58/59 (98%)
 Frame = -1

Query: 244  VRFXRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR 68
            VRF RSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR
Sbjct: 928  VRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep:
          Like moricin - Manduca sexta (Tobacco hawkmoth)
          (Tobacco hornworm)
          Length = 248

 Score = 42.3 bits (95), Expect = 0.007
 Identities = 17/20 (85%), Positives = 18/20 (90%)
 Frame = -2

Query: 78 MGDGNHSPSGGPYARLPTKA 19
          MGDGNHSPSG PYA LPT+A
Sbjct: 1  MGDGNHSPSGRPYASLPTRA 20


>UniRef50_UPI0000E4A923 Cluster: PREDICTED: similar to angiotensin
           converting enzyme, partial; n=3; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to angiotensin
           converting enzyme, partial - Strongylocentrotus
           purpuratus
          Length = 926

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = -1

Query: 229 SFLPRTIRLWNELPST 182
           SF PRTIR+WN+LP+T
Sbjct: 887 SFYPRTIRIWNQLPAT 902


>UniRef50_A1SDR0 Cluster: Regulatory protein GntR, HTH; n=1;
           Nocardioides sp. JS614|Rep: Regulatory protein GntR, HTH
           - Nocardioides sp. (strain BAA-499 / JS614)
          Length = 239

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 193 LPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVH 77
           LP+T+ P+ +D+   +  L+  L G  R+    G+AEVH
Sbjct: 146 LPATLLPDGFDIQTLEGSLFAFLRGVLRIEPDHGVAEVH 184


>UniRef50_Q95QJ4 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 276

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 66  YRRPWTSAMPGAEPSRCLPLNT--LHKPRLKKDMS*RSGNTVEGSSFHSRMVRGKKDLWK 239
           Y    +S+ P + PSR L L +  L KPR        +GN+++    H  ++  + D WK
Sbjct: 33  YELECSSSTPDSFPSRLLSLTSSLLEKPRFSDVTFKFAGNSLKSVPAHKYVLAARTDFWK 92


>UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 85

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 42  TAHLMVSGYRRPWTSAMPGAEPS-RCLPLNTLH 137
           T +L+   +R  WTS +PGA+P  RCL +N  H
Sbjct: 37  TIYLVDDNHRHSWTSTIPGAQPDHRCL-VNLRH 68


>UniRef50_Q22Y67 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 372

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 14  FIAFVGRRAYG-PPDGEWLPSPMDFSNARGR 103
           FI F+ R+  G PP+G  LP P   +N+RGR
Sbjct: 55  FILFITRKHDGKPPEGTSLPGPQGKANSRGR 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 471,405,329
Number of Sequences: 1657284
Number of extensions: 8489551
Number of successful extensions: 18483
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18478
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)