Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0073.Seq
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    27   7.2  
10_02_0172 - 6162692-6163066                                           27   9.5  
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     27   9.5  
02_05_1174 + 34692085-34692283,34693336-34693622,34693995-34694504     27   9.5  
02_01_0171 - 1179095-1179388,1179668-1179801,1180036-1180900,118...    27   9.5  
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100...    27   9.5  

>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 261 TSYLIKCVSXDLFCHXPSGYGMSSPPRCFPSAMTCP 154
           T+  ++CV+ D        +   SPPRC PS+ +CP
Sbjct: 102 TTLALQCVAKDAAAQPEMSWPRGSPPRC-PSS-SCP 135


>10_02_0172 - 6162692-6163066
          Length = 124

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
 Frame = -1

Query: 169 RYDMSFFKRGLWR---VLSGRQRLGSAPGIA---EVHGRR*PLTIRWAVCPSAYKG 20
           R+D+ F  +G WR     +   RL  A   A    V  RR  L   WA C S Y G
Sbjct: 9   RFDLVFEMKGRWRREGAAAMAMRLNEAVWHATGGSVWRRRQELAFLWADCESGYDG 64


>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -2

Query: 117 GSGLALPLALLKSMGDGNHSPSGGPYARL 31
           GS LA  L LL  M      PSG  YARL
Sbjct: 64  GSDLASSLRLLADMQAAGLRPSGAAYARL 92


>02_05_1174 + 34692085-34692283,34693336-34693622,34693995-34694504
          Length = 331

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 243 CVSXDLFCHXPSGYGMSSPPRCFPSAMTCPSSNEAYGEY 127
           C S     H P+  G  SPP  FP+++   SS+  Y  +
Sbjct: 208 CYSNSSSSHDPAAAGHHSPPP-FPASLAACSSSHHYSSH 245


>02_01_0171 -
           1179095-1179388,1179668-1179801,1180036-1180900,
           1180998-1181258,1181424-1181621,1181752-1181982,
           1185337-1185648,1185750-1186247
          Length = 930

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 199 NELPSTVFPERYDMSFFKRGLWRVLSG 119
           N+   T +  RY+M+F K G W++  G
Sbjct: 899 NDSYDTKYTTRYEMAFSKLGGWKITEG 925


>01_06_0004 +
           25507739-25508206,25509346-25509477,25509910-25510086,
           25510175-25510219,25510305-25510512,25510766-25510825,
           25510826-25511016,25511219-25511614
          Length = 558

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/53 (37%), Positives = 23/53 (43%)
 Frame = -2

Query: 210 SGYGMSSPPRCFPSAMTCPSSNEAYGEY*AVGSGLALPLALLKSMGDGNHSPS 52
           +G G  SP +  PS    PS N         GSG A P +   S G GN  PS
Sbjct: 79  NGKGYQSPYQPSPS----PSPNAPVSPSPVNGSGHASPKSPTPSCGKGNQPPS 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,881,605
Number of Sequences: 37544
Number of extensions: 253995
Number of successful extensions: 561
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)