Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0073.Seq
(538 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6) 35 0.048
SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.048
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 33 0.15
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.26
SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8) 32 0.26
SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 32 0.26
SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072) 32 0.26
SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8) 32 0.26
SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0) 32 0.26
SB_40765| Best HMM Match : DX (HMM E-Value=1.4) 32 0.26
SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.26
SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0) 32 0.26
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 32 0.26
SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3) 32 0.34
SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1) 32 0.34
SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 32 0.34
SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 31 0.60
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 31 0.60
SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5) 31 0.79
SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.79
SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082) 31 0.79
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 31 0.79
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 31 0.79
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 30 1.0
SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33) 29 1.8
SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019) 29 2.4
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 29 3.2
SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4) 29 3.2
SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2) 28 4.2
SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_19530| Best HMM Match : EMI (HMM E-Value=3.5) 28 4.2
SB_20148| Best HMM Match : Cu_bind_like (HMM E-Value=3) 28 5.6
SB_58576| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16) 27 7.3
SB_48902| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_40983| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_40552| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_38731| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05) 27 7.3
SB_34180| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0) 27 7.3
SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_32643| Best HMM Match : Carla_C4 (HMM E-Value=9.9) 27 7.3
SB_30890| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_30049| Best HMM Match : FBA_2 (HMM E-Value=7) 27 7.3
SB_29924| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 27 7.3
SB_24244| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_22775| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_40696| Best HMM Match : DUF1096 (HMM E-Value=5.5) 27 7.3
SB_36764| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_36762| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_29800| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_24298| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_19305| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_14496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_51388| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.7
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 27 9.7
SB_26110| Best HMM Match : HipA_C (HMM E-Value=5.5) 27 9.7
SB_25497| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_14729| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 27 9.7
>SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6)
Length = 231
Score = 34.7 bits (76), Expect = 0.048
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTVFPERYDMSFFKRGL 137
SFLPR +RLWN LP +V R F GL
Sbjct: 201 SFLPRALRLWNNLPQSVIDMRGCPEAFHSGL 231
>SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 34.7 bits (76), Expect = 0.048
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTVFPERYDMSFFKRGL 137
SFLPR +RLWN LP +V R F GL
Sbjct: 202 SFLPRALRLWNNLPQSVIDMRGCPEAFHAGL 232
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = -1
Query: 238 FXRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLS 122
F SF PRTIR WN LP+ V D+ FK L +S
Sbjct: 1644 FNYSFFPRTIRTWNLLPAEVV-NAADLPSFKSALAPAIS 1681
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 32.7 bits (71), Expect = 0.20
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = -1
Query: 238 FXRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 137
F SF PRTIR WN LP+ V D+ FK L
Sbjct: 1090 FNYSFFPRTIRTWNLLPAEVV-NAADLPSFKSAL 1122
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 32.3 bits (70), Expect = 0.26
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVL 125
SF PRTIR WN LPS V E + FK VL
Sbjct: 873 SFFPRTIRTWNLLPSEVI-ESSSIDSFKSSALPVL 906
>SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 174
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -1
Query: 241 RFXRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 137
++ SF PRTIR WN LP+ + E + FKR L
Sbjct: 132 KYFYSFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 165
>SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 198
Score = 32.3 bits (70), Expect = 0.26
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVL 125
SF PRTIR WN LPS V E + FK VL
Sbjct: 153 SFFPRTIRTWNLLPSEVI-ESSSIDSFKSSALPVL 186
>SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072)
Length = 375
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -1
Query: 241 RFXRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 137
++ SF PRTIR WN LP+ + E + FKR L
Sbjct: 333 KYFYSFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 366
>SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 361
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -1
Query: 241 RFXRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 137
++ SF PRTIR WN LP+ + E + FKR L
Sbjct: 319 KYFYSFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 352
>SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 581
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -1
Query: 241 RFXRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 137
++ SF PRTIR WN LP+ + E + FKR L
Sbjct: 539 KYFYSFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 572
>SB_40765| Best HMM Match : DX (HMM E-Value=1.4)
Length = 278
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -1
Query: 241 RFXRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 137
++ SF PRTIR WN LP+ + E + FKR L
Sbjct: 236 KYFYSFFPRTIRHWNTLPNELV-ELDSIEHFKRDL 269
>SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -1
Query: 241 RFXRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 137
++ SF PRTIR WN LP+ + E + FKR L
Sbjct: 782 KYFYSFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 815
>SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 666
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -1
Query: 241 RFXRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 137
++ SF PRTIR WN LP+ + E + FKR L
Sbjct: 624 KYFYSFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 657
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 32.3 bits (70), Expect = 0.26
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVL 125
SF PRTIR WN LPS V E + FK VL
Sbjct: 792 SFFPRTIRTWNLLPSEVI-ESSSIDSFKSSALPVL 825
>SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3)
Length = 243
Score = 31.9 bits (69), Expect = 0.34
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVL 125
SF PRTIR WN LPS V E + FK VL
Sbjct: 198 SFFPRTIRTWNLLPSEVV-ESSSIDSFKSSALPVL 231
>SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1)
Length = 243
Score = 31.9 bits (69), Expect = 0.34
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVL 125
SF PRTIR WN LPS V E + FK VL
Sbjct: 198 SFFPRTIRTWNLLPSEVV-ESSSIDSFKSSALPVL 231
>SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 152
Score = 31.9 bits (69), Expect = 0.34
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVL 125
SF PRTIR WN LPS V E + FK VL
Sbjct: 107 SFFPRTIRTWNLLPSEVV-ESSSIDSFKSSALPVL 140
>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 31.5 bits (68), Expect = 0.45
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTVFPERYDMSFFK 146
SF PRTIR WN LPS V E + FK
Sbjct: 564 SFFPRTIRTWNLLPSEVI-ESSSIDSFK 590
>SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 31.1 bits (67), Expect = 0.60
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 238 FXRSFLPRTIRLWNELPSTVFP 173
F SF RTI +WN LP VFP
Sbjct: 826 FLFSFYSRTIPVWNALPQAVFP 847
>SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 31.1 bits (67), Expect = 0.60
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 238 FXRSFLPRTIRLWNELPS 185
+ S+ PRT++LWN LPS
Sbjct: 746 YRNSYFPRTVKLWNSLPS 763
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 31.1 bits (67), Expect = 0.60
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTV 179
SF PRTIR WN LPS V
Sbjct: 460 SFFPRTIRTWNLLPSEV 476
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 31.1 bits (67), Expect = 0.60
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -1
Query: 238 FXRSFLPRTIRLWNELPSTVFPERY 164
F SF+PR IRLWN L TV Y
Sbjct: 744 FKYSFVPRAIRLWNSLEVTVVLAAY 768
>SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 31.1 bits (67), Expect = 0.60
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 238 FXRSFLPRTIRLWNELPS 185
+ S+ PRT++LWN LPS
Sbjct: 249 YRNSYFPRTVKLWNSLPS 266
>SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 31.1 bits (67), Expect = 0.60
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 238 FXRSFLPRTIRLWNELPS 185
+ S+ PRT++LWN LPS
Sbjct: 249 YRNSYFPRTVKLWNSLPS 266
>SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5)
Length = 284
Score = 30.7 bits (66), Expect = 0.79
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVL 125
SF PRTIR WN LP+ V E + FK VL
Sbjct: 239 SFFPRTIRTWNLLPAQVV-ESSSIDSFKSSALPVL 272
>SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 30.7 bits (66), Expect = 0.79
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTV 179
SF PR IR+WN LPS V
Sbjct: 142 SFFPRAIRIWNLLPSNV 158
>SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082)
Length = 506
Score = 30.7 bits (66), Expect = 0.79
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTV 179
SF PR IR+WN LPS V
Sbjct: 461 SFFPRAIRIWNLLPSNV 477
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 30.7 bits (66), Expect = 0.79
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTV 179
SF PR IR+WN LPS V
Sbjct: 1447 SFFPRAIRIWNLLPSNV 1463
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 30.7 bits (66), Expect = 0.79
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTV 179
SF PR IR+WN LPS V
Sbjct: 407 SFFPRAIRIWNLLPSNV 423
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRV 128
SF RTI WN LP+ +F E + FK + R+
Sbjct: 846 SFFSRTIIQWNNLPALLFNEPCSLPIFKDKISRL 879
>SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)
Length = 609
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 241 RFXRSFLPRTIRLWNELPS 185
++ SF PRTIR WN LP+
Sbjct: 565 KYFYSFFPRTIRHWNTLPN 583
>SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)
Length = 448
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -1
Query: 217 RTIRLWNELPSTVFPERYDM-SFFKRGLWRVLSGRQRLGSAPGIA 86
+ +R+W E+PS V +RY+M + F+ + L G + GS P I+
Sbjct: 59 KQLRIWREVPSGVH-KRYEMNATFRTNMKAALCGGESPGSNPIIS 102
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 222 CHXPSGYGMSSPPRCFPSAMTCPSSNEA 139
C P GY + +P RC S +C SS A
Sbjct: 2147 CSCPQGYRLENPYRCVLSNASCASSEFA 2174
>SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4)
Length = 443
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 238 FXRSFLPRTIRLWNELPSTV 179
F SF PR IR WN LP +
Sbjct: 279 FNYSFFPRAIRAWNLLPDNI 298
>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
Length = 318
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 114 SGLALPLALLKSMGDGNHSPSGGPYARLPTK 22
SG+ PLA S D H P GGP A PT+
Sbjct: 33 SGIFSPLASSTSASDSRHRPVGGP-AYSPTE 62
>SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -1
Query: 238 FXRSFLPRTIRLWNELP-STV 179
F SF P IR+WN LP ST+
Sbjct: 630 FKESFFPHAIRMWNGLPVSTI 650
>SB_19530| Best HMM Match : EMI (HMM E-Value=3.5)
Length = 244
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -1
Query: 238 FXRSFLPRTIRLWNELP-STV 179
F SF P IR+WN LP ST+
Sbjct: 212 FKESFFPHAIRMWNGLPVSTI 232
>SB_20148| Best HMM Match : Cu_bind_like (HMM E-Value=3)
Length = 428
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 64 PLTIRWAVCPSAYKGNKIKK 5
P + +AVCPS KGN KK
Sbjct: 129 PQQLNFAVCPSTQKGNPYKK 148
>SB_58576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 111 FGMSFIPRTIRTWN 124
>SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)
Length = 453
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 405 FGMSFIPRTIRTWN 418
>SB_48902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 111 FGMSFIPRTIRTWN 124
>SB_40983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 111 FGMSFIPRTIRTWN 124
>SB_40552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 111 FGMSFIPRTIRTWN 124
>SB_38731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 111 FGMSFIPRTIRTWN 124
>SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 790
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTVFPE-RYDMSF 152
SF P +I+ WN LP+T R + SF
Sbjct: 752 SFFPWSIKFWNNLPATALKSTRVNQSF 778
>SB_34180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 111 FGMSFIPRTIRTWN 124
>SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 522
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 474 FGMSFIPRTIRTWN 487
>SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 215 FGMSFIPRTIRTWN 228
>SB_32643| Best HMM Match : Carla_C4 (HMM E-Value=9.9)
Length = 159
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 111 FGMSFIPRTIRTWN 124
>SB_30890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 111 FGMSFIPRTIRTWN 124
>SB_30049| Best HMM Match : FBA_2 (HMM E-Value=7)
Length = 282
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTV 179
SF R IR+WN LPS V
Sbjct: 237 SFFARAIRIWNLLPSNV 253
>SB_29924| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 111 FGMSFIPRTIRTWN 124
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 844 FGMSFIPRTIRTWN 857
>SB_24244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 111 FGMSFIPRTIRTWN 124
>SB_22775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 111 FDMSFIPRTIRTWN 124
>SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 449 FGMSFIPRTIRTWN 462
>SB_40696| Best HMM Match : DUF1096 (HMM E-Value=5.5)
Length = 582
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 182 GVSRAL*HVLLQTRLMESIKR*AAAWLCPWHC*SPWATVTTHHQVGRMPV 33
G S A+ +LL + ES K+ + PW C S W + H ++G +PV
Sbjct: 200 GYSAAVTDILLAS-WSESTKK---RYQGPWKCWSQWCSSRDHIKLGDLPV 245
>SB_36764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 111 FGMSFIPRTIRTWN 124
>SB_36762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 111 FGMSFIPRTIRTWN 124
>SB_29800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 111 FGMSFIPRTIRTWN 124
>SB_24298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 111 FGMSFIPRTIRTWN 124
>SB_19305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 111 FGMSFIPRTIRTWN 124
>SB_14496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 238 FXRSFLPRTIRLWN 197
F SF+PRTIR WN
Sbjct: 62 FGMSFIPRTIRTWN 75
>SB_51388| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 670
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 229 SFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAE 83
SF P +I WN LP ++ + + FK L + L + G G AE
Sbjct: 525 SFFPWSINFWNNLPGSITNIK-EKGKFKEKLQQHLIDNGQWGEGQGDAE 572
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 238 FXRSFLPRTIRLWNELPSTV 179
F SF R IR+WN LP+ V
Sbjct: 1232 FNYSFFARAIRIWNLLPNDV 1251
>SB_26110| Best HMM Match : HipA_C (HMM E-Value=5.5)
Length = 210
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 238 FXRSFLPRTIRLWNELPSTV 179
F SF R IR+WN LP+ V
Sbjct: 162 FNYSFFARAIRIWNLLPNDV 181
>SB_25497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 372
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 238 FXRSFLPRTIRLWNELPSTV 179
F SF R IR+WN LP+ V
Sbjct: 316 FNYSFFARAIRIWNLLPNDV 335
>SB_14729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 238 FXRSFLPRTIRLWNELPSTV 179
F SF R IR+WN LP+ V
Sbjct: 267 FNYSFFARAIRIWNLLPNDV 286
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 238 FXRSFLPRTIRLWNELPSTV 179
F SF R IR+WN LP+ V
Sbjct: 522 FNYSFFARAIRIWNLLPNDV 541
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,188,662
Number of Sequences: 59808
Number of extensions: 260173
Number of successful extensions: 811
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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