Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0073.Seq
(538 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92831-3|CAC70085.1| 276|Caenorhabditis elegans Hypothetical pr... 32 0.30
Z99266-1|CAB16464.1| 292|Caenorhabditis elegans F15C11.2 protein. 28 4.9
Z98262-3|CAD44156.1| 454|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z98262-2|CAD44155.1| 484|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z98262-1|CAB10932.1| 502|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z71260-4|CAD44116.1| 454|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z71260-3|CAD44115.1| 484|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z71260-2|CAA95799.1| 502|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z78012-8|CAB01418.2| 945|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z75953-6|CAB00103.2| 945|Caenorhabditis elegans Hypothetical pr... 27 6.5
AY275181-1|AAP32289.1| 945|Caenorhabditis elegans soluble guany... 27 6.5
>Z92831-3|CAC70085.1| 276|Caenorhabditis elegans Hypothetical
protein F22G12.6 protein.
Length = 276
Score = 31.9 bits (69), Expect = 0.30
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 66 YRRPWTSAMPGAEPSRCLPLNT--LHKPRLKKDMS*RSGNTVEGSSFHSRMVRGKKDLWK 239
Y +S+ P + PSR L L + L KPR +GN+++ H ++ + D WK
Sbjct: 33 YELECSSSTPDSFPSRLLSLTSSLLEKPRFSDVTFKFAGNSLKSVPAHKYVLAARTDFWK 92
>Z99266-1|CAB16464.1| 292|Caenorhabditis elegans F15C11.2 protein.
Length = 292
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 30 ADGHTAHLMVSGYRRPWTSAMPGAEPS 110
ADGHT HL++ RP T A A P+
Sbjct: 69 ADGHTVHLVIRNQARP-TPAPAAATPT 94
>Z98262-3|CAD44156.1| 454|Caenorhabditis elegans Hypothetical
protein F15C11.2c protein.
Length = 454
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 30 ADGHTAHLMVSGYRRPWTSAMPGAEPS 110
ADGHT HL++ RP T A A P+
Sbjct: 69 ADGHTVHLVIRNQARP-TPAPAAATPT 94
>Z98262-2|CAD44155.1| 484|Caenorhabditis elegans Hypothetical
protein F15C11.2b protein.
Length = 484
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 30 ADGHTAHLMVSGYRRPWTSAMPGAEPS 110
ADGHT HL++ RP T A A P+
Sbjct: 69 ADGHTVHLVIRNQARP-TPAPAAATPT 94
>Z98262-1|CAB10932.1| 502|Caenorhabditis elegans Hypothetical
protein F15C11.2a protein.
Length = 502
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 30 ADGHTAHLMVSGYRRPWTSAMPGAEPS 110
ADGHT HL++ RP T A A P+
Sbjct: 69 ADGHTVHLVIRNQARP-TPAPAAATPT 94
>Z71260-4|CAD44116.1| 454|Caenorhabditis elegans Hypothetical
protein F15C11.2c protein.
Length = 454
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 30 ADGHTAHLMVSGYRRPWTSAMPGAEPS 110
ADGHT HL++ RP T A A P+
Sbjct: 69 ADGHTVHLVIRNQARP-TPAPAAATPT 94
>Z71260-3|CAD44115.1| 484|Caenorhabditis elegans Hypothetical
protein F15C11.2b protein.
Length = 484
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 30 ADGHTAHLMVSGYRRPWTSAMPGAEPS 110
ADGHT HL++ RP T A A P+
Sbjct: 69 ADGHTVHLVIRNQARP-TPAPAAATPT 94
>Z71260-2|CAA95799.1| 502|Caenorhabditis elegans Hypothetical
protein F15C11.2a protein.
Length = 502
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 30 ADGHTAHLMVSGYRRPWTSAMPGAEPS 110
ADGHT HL++ RP T A A P+
Sbjct: 69 ADGHTVHLVIRNQARP-TPAPAAATPT 94
>Z78012-8|CAB01418.2| 945|Caenorhabditis elegans Hypothetical protein
F57F5.2 protein.
Length = 945
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 72 RPWTSAMPGAEPSRCLPLNTLHKPRLKKDMS*RSGNTVEGSSFHSRMVRGKKD 230
R SA P R L L K + + M+ G++V SS HS +R KKD
Sbjct: 871 RTTVSAKP-TTTRRLLNQKDLEKEKKRSSMA---GSSVTSSSAHSHSIRSKKD 919
>Z75953-6|CAB00103.2| 945|Caenorhabditis elegans Hypothetical protein
F57F5.2 protein.
Length = 945
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 72 RPWTSAMPGAEPSRCLPLNTLHKPRLKKDMS*RSGNTVEGSSFHSRMVRGKKD 230
R SA P R L L K + + M+ G++V SS HS +R KKD
Sbjct: 871 RTTVSAKP-TTTRRLLNQKDLEKEKKRSSMA---GSSVTSSSAHSHSIRSKKD 919
>AY275181-1|AAP32289.1| 945|Caenorhabditis elegans soluble guanylyl
cyclase GCY-33 protein.
Length = 945
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 72 RPWTSAMPGAEPSRCLPLNTLHKPRLKKDMS*RSGNTVEGSSFHSRMVRGKKD 230
R SA P R L L K + + M+ G++V SS HS +R KKD
Sbjct: 871 RTTVSAKP-TTTRRLLNQKDLEKEKKRSSMA---GSSVTSSSAHSHSIRSKKD 919
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,562,965
Number of Sequences: 27780
Number of extensions: 190955
Number of successful extensions: 403
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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