Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0072.Seq
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   3.8  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    21   8.7  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    21   8.7  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    21   8.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.7  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +1

Query: 379 APQKNPPRPLVAALKDIVPVAMMEA*HPPTVPAQVEELLQLSVTAKSDAASSEDG 543
           +PQ+  P     + KD   V        P+V   +E+L++ S  ++S   SS  G
Sbjct: 698 SPQQRSPSVTDLSTKDGTTVPESNNGSSPSVLNAIEKLIEKSFDSRSRQNSSFPG 752


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 447 HHGYWNY 427
           HHG WNY
Sbjct: 72  HHGQWNY 78



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 13/67 (19%), Positives = 25/67 (37%)
 Frame = +2

Query: 446 WKRNIHRRFQHKWRSFFSSASPPKATPRHLKTVFWWWNRRKSGSRSQKRYPYSHPQPDKT 625
           W  +    F+      + + + P    R  K +FW      + + ++ +Y  + P P   
Sbjct: 76  WNYSPDNHFEQYPNPTYYNLADPARDSR--KGLFWSPAATAAATATEYKYSAAAPGPSDP 133

Query: 626 STRQCQQ 646
           S   C Q
Sbjct: 134 SVSSCHQ 140


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 582 HKSATRTVIHNPIRRAPD 635
           HK   R VIH+ I   P+
Sbjct: 79  HKEGVRKVIHHLIENKPN 96


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 582 HKSATRTVIHNPIRRAPD 635
           HK   R V+H+ I+  P+
Sbjct: 79  HKEGVRKVLHHLIKNKPN 96


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 582 HKSATRTVIHNPIRRAPD 635
           HK   R VIH+ I   P+
Sbjct: 79  HKEGVRKVIHHLIENKPN 96


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +2

Query: 476 HKWRSFFSSASPPKATPRHLKT 541
           H W+     A  P +TP  L T
Sbjct: 65  HPWKKSPQGAPSPSSTPSSLPT 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,766
Number of Sequences: 336
Number of extensions: 3459
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)