Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0072.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.3  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   2.3  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    26   4.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.4  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   5.4  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    25   7.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   9.4  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   9.4  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   9.4  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 35   QAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDP 172
            QA  +   V PAV+A + T P VV  V HP   P   +    ++DP
Sbjct: 1284 QASAVSSNV-PAVSASISTPPAVVPTVQHPQ--PTKQIPTAAVKDP 1326


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 352 LAVPVTLMQAPQKNPPRPLVAALK 423
           L  PV L Q P + PP P + ALK
Sbjct: 166 LGQPVLLTQRPCETPPTPSIEALK 189


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 366 YWNCQWPIHFHHDCLSYIHKCCYR 295
           Y NC WP+ +  D +   ++C YR
Sbjct: 188 YINCWWPVFYEKDFMDE-YECLYR 210


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 18/54 (33%), Positives = 32/54 (59%)
 Frame = -2

Query: 566 SFYSTTRKPSSDDAASLLAVTLS*RSSSTCAGTVGGCYASIMATGTISFSAATS 405
           S  ST+  PS+  ++S  + +LS  SSS+ A +     +SI+++ + S S+ TS
Sbjct: 233 SSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASS-SSSSSSIISSSSSSSSSPTS 285


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 24/99 (24%), Positives = 46/99 (46%)
 Frame = -2

Query: 638 TVGCSSYRVVDDCTGSAFVTGILISFYSTTRKPSSDDAASLLAVTLS*RSSSTCAGTVGG 459
           TV  SS   V   T S+  +    S  +TT  PSS  ++S  + + S  SSS+ + +   
Sbjct: 126 TVSSSS---VSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSS 182

Query: 458 CYASIMATGTISFSAATSGRGGFFCGACISVTGTASGQY 342
             +S  ++ + S S+++S        + + +T + S  +
Sbjct: 183 SSSSSSSSSSSSSSSSSSSSSS---SSSVPITSSTSSSH 218


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 274 LQDPVHPAVAALMDIAQAIVMEV 342
           L D VHPA   L+DIA+A   EV
Sbjct: 72  LLDIVHPAAKTLVDIARAQDAEV 94


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = -2

Query: 557 STTRKPSSDDAASLLAVTLS*RSSSTCAGTVGGCYASIMATGTISFSAATSGRGGFFCGA 378
           S T    S  AAS  A + S  SSS  + T     +S +++   S SA +S        +
Sbjct: 175 SATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNS 234

Query: 377 CISVTGTAS 351
             S T T+S
Sbjct: 235 TTSATATSS 243


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 440 P*WKRNIHRRFQHKWRSFFSSASPPKATPRHLKTVFWWWNRRKSGSRSQKR 592
           P  + + H    H+   +F+S SPP      LK +   W+  +S  R  KR
Sbjct: 546 PFCRPSAHETLMHE---YFTSESPPPEPAVILKNMQGSWHEWESKKRKSKR 593


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 457  HPPTVPAQVEELLQLSVTAKSDAASSEDGFLVVE*KEIRIPVTK 588
            H P         + LSV  + D AS +D  L+    ++RIP +K
Sbjct: 1046 HVPNSLRHKMNKVMLSVLEQLDVASIQDDVLIAIRGDMRIPTSK 1089


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,262
Number of Sequences: 5004
Number of extensions: 47700
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)