Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0072.Seq
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257 34 0.11
01_02_0008 + 10134687-10135019 33 0.20
07_03_1121 - 24130451-24130462,24130827-24131255 29 2.4
04_04_1437 + 33600282-33601562 29 2.4
05_06_0286 + 26932395-26933155,26934287-26934407,26934496-269347... 29 3.2
11_06_0463 + 23879587-23879771,23879783-23881658 29 4.2
07_03_1199 + 24752111-24752332 29 4.2
04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819 29 4.2
10_08_0606 - 19164215-19164619 28 5.6
05_06_0156 - 26031463-26031572,26031961-26032039,26032133-260322... 28 5.6
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 28 5.6
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 28 7.4
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 28 7.4
02_03_0385 + 18396109-18396294,18396344-18396379 27 9.7
01_07_0121 - 41194049-41194558 27 9.7
>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
Length = 921
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Frame = -1
Query: 492 KLLHL--CWNRRWMLRFHHGYWNYILQCCYQRTWW-ILLW-----CLHQCYWNCQWPIHF 337
K LH+ CW+ + + R N +Q +R WW L+W H+ Y+NC++P F
Sbjct: 848 KELHVRGCWSLQHLPRLSQEDLNQAVQVSGERAWWEKLIWDDDSSLTHRSYYNCKFPPPF 907
>01_02_0008 + 10134687-10135019
Length = 110
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2
Query: 563 FYSTTRKPSSDDAASLLAVTLS*RSSSTCAGTVGGCYASIMATGT 429
+ S+ RK + S+ + T+S SSS+ AGT C+ S++ T T
Sbjct: 6 YSSSERKKGPEKDTSIRSATVSFSSSSSSAGTRPSCWRSVVTTAT 50
>07_03_1121 - 24130451-24130462,24130827-24131255
Length = 146
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -3
Query: 208 NCIHKCCYRPMYWILQGLCLHQCYW-NCRWMIHFHHDCRNCIHKC 77
NC C P+ W+ G C H+C C + F + R C H C
Sbjct: 29 NCC-AVCVEPLEWVAIGPCGHRCVCARCIVQVRFVSEDRRC-HVC 71
>04_04_1437 + 33600282-33601562
Length = 426
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 328 IVMEVYWPLAVPVTLMQAPQKNPPRP 405
+V E WPLA P Q P PP+P
Sbjct: 1 MVREEAWPLAAPQQQQQQPSAPPPQP 26
>05_06_0286 +
26932395-26933155,26934287-26934407,26934496-26934772,
26934934-26935094
Length = 439
Score = 29.1 bits (62), Expect = 3.2
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Frame = -2
Query: 644 AGTVGCSSYRVVDDCTGSAFVTGILISFYSTTRKPSSDDAASLLAVTLS*RSSSTCAGTV 465
AG++ ++ C+ S V G + + D S +V ++ + AG
Sbjct: 49 AGSISAAAGAGDGACSSSVAVAGT-----GSISAAGAADGPSSSSVAVAGTGLISAAGAA 103
Query: 464 -GGCYASIMATGTISFSAATSGRGGFFCGACISVTGTAS 351
G C +S+ GT S SAA +G G F + G+ S
Sbjct: 104 DGACSSSVAVAGTGSISAARAGDGPFSSSVAGAGAGSIS 142
>11_06_0463 + 23879587-23879771,23879783-23881658
Length = 686
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -2
Query: 473 GTVGGCYASIMATGTISFSAATSGRGGFFCGACISVTGTASGQY 342
G + ++A + F A GRGG G C+ V +G++
Sbjct: 163 GETFAAHRCVLAARSPVFKAELCGRGGAAAGRCVDVDDMGAGEF 206
>07_03_1199 + 24752111-24752332
Length = 73
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 298 VAALMDIAQAIVMEVYWPLAVPVTLMQAP 384
V A+ +A + + WP PV +M+AP
Sbjct: 8 VGAIASVAVGAAVSLLWPAVAPVVMMKAP 36
>04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819
Length = 451
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 11 PAVPVTLMQAQTLQD-PVHPAVAALMDTVPTVVME--VYHPPA 130
P+ + TL+D P+ P+ AA DT+P + +HPPA
Sbjct: 22 PSNTTVTLPPLTLRDVPLLPSAAAATDTIPNPISRHPYFHPPA 64
>10_08_0606 - 19164215-19164619
Length = 134
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = -2
Query: 578 GILISFYSTTRKPSSDDAASLLAVTLS*RSSSTCAGTVGGC-YA-SIMATGTISFSAATS 405
G L++ Y+ +P+S L + RSSS TV G Y+ S + G + A +
Sbjct: 31 GNLVALYAGPYRPASSSMGCYLVYDAAARSSSPPLSTVPGVPYSDSHSSPGRATVIAPAA 90
Query: 404 GRGGFFCGACISVTGTA 354
GGF G + TA
Sbjct: 91 TGGGFMDGHSVLPPSTA 107
>05_06_0156 -
26031463-26031572,26031961-26032039,26032133-26032261,
26032362-26032559,26032741-26032900,26032980-26033147,
26033290-26033405,26033491-26033586,26033675-26034058,
26035150-26035572,26037202-26037315,26037969-26038017,
26038103-26038262,26038345-26039014
Length = 951
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 444 HGYWNYILQCCYQRTWWILL 385
HG W Y+++ Y+RT W+ L
Sbjct: 586 HGEWLYLIRIWYKRTTWMYL 605
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = -3
Query: 229 HFHHDCWNC--IHKCCYRPMYWILQGL 155
HF+ +CWNC CY W LQ L
Sbjct: 769 HFYCECWNCSLYPLLCYLGPTWFLQYL 795
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 5 HPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTL 163
H P P+ L+ + ++ P+ + +L V+++YH V L A TL
Sbjct: 581 HSPPSPILLLLVEGVRVPLPRTIRSLALVAMITVVDLYHVLTAVVPLYVAMTL 633
>07_01_0389 -
2915191-2915604,2915696-2915752,2915867-2915922,
2916053-2916113,2916243-2916365,2916505-2916537,
2916617-2916709,2916839-2916934,2917025-2917203,
2917344-2917530,2918051-2918184,2918311-2918518,
2918598-2918633,2918785-2919241,2919633-2919736,
2920489-2920569,2920646-2920697,2920837-2920876,
2920991-2921085,2921241-2921383,2921899-2922006,
2922120-2922221,2922302-2922348,2922425-2922554,
2923173-2923304,2923404-2923616,2923709-2923963,
2924053-2924799
Length = 1460
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 59 VHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHRAVAALMD 202
V A A L + T+++ ++ PPA+P L A L + A AAL D
Sbjct: 43 VDDAAALLAEAGCTLLVPLHQPPALPSPLSFAPRLARALAAADAALRD 90
>02_03_0385 + 18396109-18396294,18396344-18396379
Length = 73
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 301 AALMDIAQAIVMEVYWPLAVPVTL 372
+ LM +A A+V+ VY PL++PV L
Sbjct: 9 SVLMHVAAALVVLVYIPLSMPVKL 32
>01_07_0121 - 41194049-41194558
Length = 169
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 430 VPVAMMEA*HPPTVPAQVEELLQLSVTAKSDAASSEDG 543
+P A + A PP VP Q++E ++TA + AA+ G
Sbjct: 19 LPTAAVAA--PPDVPQQLQEQYYAAITAAAAAAAQHGG 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,104,400
Number of Sequences: 37544
Number of extensions: 372476
Number of successful extensions: 1390
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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