Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0072.Seq
(648 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC117255-1|AAI17256.1| 1048|Homo sapiens Sin3A-associated protei... 33 0.66
AY220791-1|AAO63591.1| 1048|Homo sapiens SIN3A-associated protei... 33 0.66
AK055979-1|BAB71063.1| 710|Homo sapiens protein ( Homo sapiens ... 33 0.66
AC118060-1|AAX88975.1| 315|Homo sapiens unknown protein. 33 0.66
AK129846-1|BAC85241.1| 236|Homo sapiens protein ( Homo sapiens ... 33 1.2
AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing ... 31 2.7
AK098423-1|BAC05305.1| 485|Homo sapiens protein ( Homo sapiens ... 31 3.5
AB126070-1|BAD20197.1| 278|Homo sapiens keratin associated prot... 30 8.2
>BC117255-1|AAI17256.1| 1048|Homo sapiens Sin3A-associated protein,
130kDa protein.
Length = 1048
Score = 33.5 bits (73), Expect = 0.66
Identities = 23/77 (29%), Positives = 35/77 (45%)
Frame = +1
Query: 289 HPAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRPLVAALKDIVPVAMMEA*HPPT 468
H AVA+ +A P AVP++ + K PP+P + + + I P PP
Sbjct: 110 HHAVASATPVAVTAPPAHLTP-AVPLSFSEGLMKPPPKPTMPS-RPIAPAPPSTLSLPPK 167
Query: 469 VPAQVEELLQLSVTAKS 519
VP QV ++ S+ S
Sbjct: 168 VPGQVTVTMESSIPQAS 184
>AY220791-1|AAO63591.1| 1048|Homo sapiens SIN3A-associated protein
130 protein.
Length = 1048
Score = 33.5 bits (73), Expect = 0.66
Identities = 23/77 (29%), Positives = 35/77 (45%)
Frame = +1
Query: 289 HPAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRPLVAALKDIVPVAMMEA*HPPT 468
H AVA+ +A P AVP++ + K PP+P + + + I P PP
Sbjct: 110 HHAVASATPVAVTAPPAHLTP-AVPLSFSEGLMKPPPKPTMPS-RPIAPAPPSTLSLPPK 167
Query: 469 VPAQVEELLQLSVTAKS 519
VP QV ++ S+ S
Sbjct: 168 VPGQVTVTMESSIPQAS 184
>AK055979-1|BAB71063.1| 710|Homo sapiens protein ( Homo sapiens
cDNA FLJ31417 fis, clone NT2NE2000327, weakly similar to
GLUCOAMYLASE S1/S2 PRECURSOR (EC 3.2.1.3). ).
Length = 710
Score = 33.5 bits (73), Expect = 0.66
Identities = 23/77 (29%), Positives = 35/77 (45%)
Frame = +1
Query: 289 HPAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRPLVAALKDIVPVAMMEA*HPPT 468
H AVA+ +A P AVP++ + K PP+P + + + I P PP
Sbjct: 84 HHAVASATPVAVTAPPAHLTP-AVPLSFSEGLMKPPPKPTMPS-RPIAPAPPSTLSLPPK 141
Query: 469 VPAQVEELLQLSVTAKS 519
VP QV ++ S+ S
Sbjct: 142 VPGQVTVTMESSIPQAS 158
>AC118060-1|AAX88975.1| 315|Homo sapiens unknown protein.
Length = 315
Score = 33.5 bits (73), Expect = 0.66
Identities = 23/77 (29%), Positives = 35/77 (45%)
Frame = +1
Query: 289 HPAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRPLVAALKDIVPVAMMEA*HPPT 468
H AVA+ +A P AVP++ + K PP+P + + + I P PP
Sbjct: 110 HHAVASATPVAVTAPPAHLTP-AVPLSFSEGLMKPPPKPTMPS-RPIAPAPPSTLSLPPK 167
Query: 469 VPAQVEELLQLSVTAKS 519
VP QV ++ S+ S
Sbjct: 168 VPGQVTVTMESSIPQAS 184
>AK129846-1|BAC85241.1| 236|Homo sapiens protein ( Homo sapiens
cDNA FLJ26336 fis, clone HRT02842. ).
Length = 236
Score = 32.7 bits (71), Expect = 1.2
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = -3
Query: 229 HFHHDCWNCIHKCCYRPMYWILQGLCLHQCYWNCRWMIHFHHDCRNCIHKCCYRRMYWIL 50
H H + IH Y +Y + +C+H C + C + + C+H C + MY
Sbjct: 76 HMHTYMYIHIHAYAYIYVYSYTR-ICIHICVFICTHAYIYVYSYVQCMHMCIH--MY--- 129
Query: 49 QGLCLHQCYWNC 14
C+H C + C
Sbjct: 130 --TCMHMCIFIC 139
>AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing 4
protein.
Length = 1362
Score = 31.5 bits (68), Expect = 2.7
Identities = 25/81 (30%), Positives = 35/81 (43%)
Frame = +2
Query: 8 PPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHRAV 187
PPAV L Q L P M P V++E PPA P+T MQ Q + + V
Sbjct: 887 PPAVSPALTQTPLLPQPP-------MAQPPQVLLEDEEPPAPPLTSMQMQLYLQQLQK-V 938
Query: 188 AALMDTVPTVVMEVYHPRAVP 250
+P+V ++ P +P
Sbjct: 939 QPPTPLLPSVKVQSQPPPPLP 959
>AK098423-1|BAC05305.1| 485|Homo sapiens protein ( Homo sapiens
cDNA FLJ25557 fis, clone JTH02756. ).
Length = 485
Score = 31.1 bits (67), Expect = 3.5
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +2
Query: 35 QAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHRAVAALMDTVPT 214
+ +T + +V ++ T+PT++M P V VT++Q A A VP+
Sbjct: 373 EMETEEKEAGGSVMLILRTMPTLMMRTEDRPKVAVTMIQTAAAMGVASGAGATAAAPVPS 432
Query: 215 VVMEVYHPRAVPV 253
V PR + V
Sbjct: 433 PVAASTRPRRMAV 445
>AB126070-1|BAD20197.1| 278|Homo sapiens keratin associated protein
protein.
Length = 278
Score = 29.9 bits (64), Expect = 8.2
Identities = 19/74 (25%), Positives = 24/74 (32%)
Frame = -2
Query: 482 TCAGTVGGCYASIMATGTISFSAATSGRGGFFCGACISVTGTASGQYXXXXXXXXXXXXX 303
+C G+ GGC + G + G G CG C S G
Sbjct: 169 SCGGSKGGCGSCGGCKGGCGSCGGSKGGCGSGCGGCGSGCGV---PVCCCSCSSCGSCAG 225
Query: 302 XXAGCTGSCKVCAC 261
GC SC C+C
Sbjct: 226 SKGGCGSSCSQCSC 239
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,385,021
Number of Sequences: 237096
Number of extensions: 2006927
Number of successful extensions: 6072
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6063
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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