Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0072.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical pr...    32   0.30 
U53141-5|AAA96107.1|  574|Caenorhabditis elegans Hypothetical pr...    32   0.30 
U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine rece...    29   2.1  
AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical...    29   2.1  
Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.      29   2.8  
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    29   3.8  
AF101317-1|AAC69234.1|  330|Caenorhabditis elegans Seven tm rece...    29   3.8  
Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z79603-8|CAH04750.1|  137|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF067624-3|AAM81100.2|  678|Caenorhabditis elegans Hypothetical ...    23   9.3  
AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical ...    23   9.4  
AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical ...    23   9.4  

>U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical
           protein ZC317.7 protein.
          Length = 574

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 56  PVHPAVAALMDTVPTVVMEVYHP-PAVPVTLMQAQTLQDPV 175
           P+HP +AA+  T    +M V HP P +P+    +Q+ Q P+
Sbjct: 203 PMHPQMAAMAATFNPGLMVVSHPVPVIPIPSNSSQSSQPPM 243


>U53141-5|AAA96107.1|  574|Caenorhabditis elegans Hypothetical
           protein C14C11.2 protein.
          Length = 574

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 56  PVHPAVAALMDTVPTVVMEVYHP-PAVPVTLMQAQTLQDPV 175
           P+HP +AA+  T    +M V HP P +P+    +Q+ Q P+
Sbjct: 203 PMHPQMAAMAATFNPGLMVVSHPVPVIPIPSNSSQSSQPPM 243


>U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 9 protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 504 AELKKLLHLCWNRRWMLRFHHGYWNYILQCCYQRTWWILLW 382
           A    LLHL  +  W L     Y NYIL      TW + ++
Sbjct: 90  ASWSALLHLFIHSMWSLLLSFAYRNYILSSAPPSTWKVFMF 130


>AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37D8A.26 protein.
          Length = 88

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 154 CLHQCYWNCRWMIHFHHDCRNC 89
           C   C+W CR  +  HH C NC
Sbjct: 58  CFIVCFW-CRCFMDVHHRCPNC 78


>Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical
           protein D2045.1b protein.
          Length = 634

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +1

Query: 292 PAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRP 405
           P VA     A   V   Y P   P   M APQ+ PP P
Sbjct: 176 PRVAPATPTATTPVQNEYHPQQQPHPAMMAPQQGPPAP 213


>Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical
           protein D2045.1a protein.
          Length = 959

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +1

Query: 292 PAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRP 405
           P VA     A   V   Y P   P   M APQ+ PP P
Sbjct: 501 PRVAPATPTATTPVQNEYHPQQQPHPAMMAPQQGPPAP 538


>AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.
          Length = 959

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +1

Query: 292 PAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRP 405
           P VA     A   V   Y P   P   M APQ+ PP P
Sbjct: 501 PRVAPATPTATTPVQNEYHPQQQPHPAMMAPQQGPPAP 538


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = -2

Query: 629 CSSYRVVDDCTGSAFVTGILISFYSTTRK--PSSDDAASLLAVTLS*RSSSTCAGTVGGC 456
           C+S+     CT S + T I   + + T     SS D++S  +      +SS+C  +   C
Sbjct: 138 CTSWAANGFCTSSFYTTAIKTQYCAATCSLCSSSSDSSSSSSTA---STSSSCTDSASSC 194

Query: 455 YASIMATGTISFSAATSGRGGFFC 384
            +S  A G  + S  T  +   +C
Sbjct: 195 -SSWAANGFCTNSFYTDAQRELYC 217


>AF101317-1|AAC69234.1|  330|Caenorhabditis elegans Seven tm
           receptor protein 16 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = -1

Query: 465 RWMLRFHHGYWNYILQCCYQRTWWILLWCLHQCYWNCQWPIHF 337
           +++ R+   +  Y L+  Y + W+ L+W ++  ++ CQ+ I F
Sbjct: 110 QFLYRYFAIFHEYYLK--YFKGWYFLIWIVYAGWFGCQYAIGF 150


>Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical
           protein F36H2.1c protein.
          Length = 1071

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -2

Query: 557 STTRKPSSDDAASLLAVTLS*RSSSTCAGTVGGCYASIMATGTISFSAATSGRGGFFC 384
           S+++KP    ++   +V+         A T+    AS+ +  T  FSAA++ +GG  C
Sbjct: 13  SSSQKPCVSSSSDDFSVSFVRAEEDDVATTIRDKTASLKSNAT-HFSAASAAKGGMLC 69


>Z79603-8|CAH04750.1|  137|Caenorhabditis elegans Hypothetical
           protein M163.8 protein.
          Length = 137

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
 Frame = -2

Query: 566 SFYSTTRK----PSSDDAASLLAVTLS*R---SSSTCAGTVGGCYASIMATGTISFSAAT 408
           SFYS  +K    P+S    S  + T S     SSSTC  +   C AS  + G  + +  T
Sbjct: 40  SFYSDAQKTEYCPASCRLCSGASSTTSSSASSSSSTCGDSNSNC-ASWASNGFCNSTFYT 98

Query: 407 SGRGGFFCGACISVTGTAS 351
             +   +CGA  ++ G AS
Sbjct: 99  PAQKSQYCGATCNLCGGAS 117


>AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical
           protein F36H2.1c protein.
          Length = 1071

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -2

Query: 557 STTRKPSSDDAASLLAVTLS*RSSSTCAGTVGGCYASIMATGTISFSAATSGRGGFFC 384
           S+++KP    ++   +V+         A T+    AS+ +  T  FSAA++ +GG  C
Sbjct: 13  SSSQKPCVSSSSDDFSVSFVRAEEDDVATTIRDKTASLKSNAT-HFSAASAAKGGMLC 69


>Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical
           protein F36H2.1a protein.
          Length = 1074

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -2

Query: 557 STTRKPSSDDAASLLAVTLS*RSSSTCAGTVGGCYASIMATGTISFSAATSGRGGFFCGA 378
           S+++KP    ++   +V+         A T+    AS+ +  T  FSAA++ +GG F   
Sbjct: 13  SSSQKPCVSSSSDDFSVSFVRAEEDDVATTIRDKTASLKSNAT-HFSAASAAKGGMFDFR 71

Query: 377 C 375
           C
Sbjct: 72  C 72


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = -2

Query: 557  STTRKPSSDDAASLLAVTLS*RSSSTCAGTVGGCYASIMATGTISFSAATSGRGGFFCGA 378
            ST    ++  AAS  A + +   SST +GTVG   +    T + S    ++   G    +
Sbjct: 1500 STVASSTASPAASSTAPSSTGTMSSTSSGTVGSTISESSTTASASSQTGSTVTMGSSSTS 1559

Query: 377  CISVTGTASGQ 345
             +S +  +S Q
Sbjct: 1560 GVSTSSASSTQ 1570


>AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical
           protein F36H2.1a protein.
          Length = 1074

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -2

Query: 557 STTRKPSSDDAASLLAVTLS*RSSSTCAGTVGGCYASIMATGTISFSAATSGRGGFFCGA 378
           S+++KP    ++   +V+         A T+    AS+ +  T  FSAA++ +GG F   
Sbjct: 13  SSSQKPCVSSSSDDFSVSFVRAEEDDVATTIRDKTASLKSNAT-HFSAASAAKGGMFDFR 71

Query: 377 C 375
           C
Sbjct: 72  C 72


>AF067624-3|AAM81100.2|  678|Caenorhabditis elegans Hypothetical
           protein M01B12.4c protein.
          Length = 678

 Score = 23.4 bits (48), Expect(2) = 9.3
 Identities = 10/37 (27%), Positives = 14/37 (37%)
 Frame = +1

Query: 292 PAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPR 402
           PA      +   +   VY P + P T  +   K P R
Sbjct: 187 PAAVTTKKVGSMMTQSVYTPTSRPATSSRLTMKQPAR 223



 Score = 22.2 bits (45), Expect(2) = 9.3
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +1

Query: 382 PQKNPPRPLVAALKDIVPVAMMEA*HPPTVPAQVEEL 492
           P+K P     AA K   PVA  E   P  V A VE +
Sbjct: 254 PRKLPFGKPEAARKSASPVAAQEPTAPVVVVAPVEAI 290


>AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical
           protein M01B12.4b protein.
          Length = 644

 Score = 23.4 bits (48), Expect(2) = 9.4
 Identities = 10/37 (27%), Positives = 14/37 (37%)
 Frame = +1

Query: 292 PAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPR 402
           PA      +   +   VY P + P T  +   K P R
Sbjct: 197 PAAVTTKKVGSMMTQSVYTPTSRPATSSRLTMKQPAR 233



 Score = 22.2 bits (45), Expect(2) = 9.4
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +1

Query: 382 PQKNPPRPLVAALKDIVPVAMMEA*HPPTVPAQVEEL 492
           P+K P     AA K   PVA  E   P  V A VE +
Sbjct: 264 PRKLPFGKPEAARKSASPVAAQEPTAPVVVVAPVEAI 300


>AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical
           protein M01B12.4a protein.
          Length = 634

 Score = 23.4 bits (48), Expect(2) = 9.4
 Identities = 10/37 (27%), Positives = 14/37 (37%)
 Frame = +1

Query: 292 PAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPR 402
           PA      +   +   VY P + P T  +   K P R
Sbjct: 187 PAAVTTKKVGSMMTQSVYTPTSRPATSSRLTMKQPAR 223



 Score = 22.2 bits (45), Expect(2) = 9.4
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +1

Query: 382 PQKNPPRPLVAALKDIVPVAMMEA*HPPTVPAQVEEL 492
           P+K P     AA K   PVA  E   P  V A VE +
Sbjct: 254 PRKLPFGKPEAARKSASPVAAQEPTAPVVVVAPVEAI 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,587,904
Number of Sequences: 27780
Number of extensions: 298126
Number of successful extensions: 1040
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)