Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0072.Seq
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    27   0.21 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    27   0.21 
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    25   0.48 
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    25   0.48 
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    25   0.48 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.4  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 100 CRNCIHKCCYRRMYWILQGLC 38
           CRNCIH   +  ++W+  G C
Sbjct: 35  CRNCIHPTVFSVLFWL--GYC 53



 Score = 26.2 bits (55), Expect = 0.27
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -3

Query: 214 CWNCIHKCCYRPMYWILQGLC---LHQCYWNCRWMIHFHHDCRNCIHKC-CYRRMYWILQ 47
           C NCIH   +  ++W+  G C   ++ C +   +   F    ++ I KC C RR   + +
Sbjct: 35  CRNCIHPTVFSVLFWL--GYCNSAINPCIY-ALFSKDFRFAFKSIICKCFCKRRTNTLRR 91

Query: 46  G 44
           G
Sbjct: 92  G 92


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 100 CRNCIHKCCYRRMYWILQGLC 38
           CRNCIH   +  ++W+  G C
Sbjct: 483 CRNCIHPTVFSVLFWL--GYC 501



 Score = 26.2 bits (55), Expect = 0.27
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -3

Query: 214 CWNCIHKCCYRPMYWILQGLC---LHQCYWNCRWMIHFHHDCRNCIHKC-CYRRMYWILQ 47
           C NCIH   +  ++W+  G C   ++ C +   +   F    ++ I KC C RR   + +
Sbjct: 483 CRNCIHPTVFSVLFWL--GYCNSAINPCIY-ALFSKDFRFAFKSIICKCFCKRRTNTLRR 539

Query: 46  G 44
           G
Sbjct: 540 G 540


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 481 LVLEPSVDVTLPSWLLELYP 422
           LV E S  +TLPSW   ++P
Sbjct: 181 LVAEQSYGLTLPSWTNNIFP 200


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 481 LVLEPSVDVTLPSWLLELYP 422
           LV E S  +TLPSW   ++P
Sbjct: 196 LVAEQSYGLTLPSWTNNIFP 215


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 481 LVLEPSVDVTLPSWLLELYP 422
           LV E S  +TLPSW   ++P
Sbjct: 84  LVAEQSYGLTLPSWTNNIFP 103


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 5/5 (100%), Positives = 5/5 (100%)
 Frame = -1

Query: 648 CCWHC 634
           CCWHC
Sbjct: 605 CCWHC 609


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
 Frame = -1

Query: 438 YWNYILQCCYQRTWW---ILLWCLHQCYWN 358
           +  Y   C Y  TWW   IL   +H   W+
Sbjct: 152 FTTYTPVCEYDHTWWPYDILNCTIHIASWS 181


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 455 YASIMATGTISFSAATSGRGGFFCGACISVTGTASG 348
           Y  I++ GT+        R GF+   C +  G  SG
Sbjct: 762 YTKILSNGTLLLQHVKEDREGFY--LCQASNGIGSG 795


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 455 YASIMATGTISFSAATSGRGGFFCGACISVTGTASG 348
           Y  I++ GT+        R GF+   C +  G  SG
Sbjct: 758 YTKILSNGTLLLQHVKEDREGFY--LCQASNGIGSG 791


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,895
Number of Sequences: 438
Number of extensions: 3645
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)