Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0072.Seq
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 33 0.22
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol... 30 1.2
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 30 1.2
At3g13890.1 68416.m01755 myb family transcription factor (MYB26)... 30 1.5
At3g28840.1 68416.m03598 expressed protein 29 2.7
At3g61670.1 68416.m06911 expressed protein weak similarity to ex... 29 3.5
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 29 3.5
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 29 3.5
At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa... 29 3.5
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 29 3.5
At2g25460.1 68415.m03049 expressed protein 27 8.1
At1g53130.1 68414.m06016 stigma-specific Stig1 family protein si... 27 8.1
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 32.7 bits (71), Expect = 0.22
Identities = 23/70 (32%), Positives = 28/70 (40%)
Frame = +2
Query: 2 YHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHR 181
Y PP PV + T PV P T P V Y+PP PV A ++ P
Sbjct: 157 YKPPTSPV---KPPTTTPPVKPPT-----TTPPVQPPTYNPPTTPVKPPTAPPVKPPTPP 208
Query: 182 AVAALMDTVP 211
V +D VP
Sbjct: 209 PVRTRIDCVP 218
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +2
Query: 2 YHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTV-VMEVYHPPAVPVT 142
Y PP +P T ++ T + PV P + P V + PP P T
Sbjct: 59 YKPPTLPTTPIKPPTTKPPVKPPTIPVTPVKPPVSTPPIKLPPVQPPT 106
>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
oligopeptidase family protein low similarity to
SP|Q99797 Mitochondrial intermediate peptidase,
mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
contains Pfam profile PF01432: Peptidase family M3
Length = 860
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Frame = -1
Query: 504 AELKKLLHLCWNR----RWMLRFHH------GYWNYILQCCYQRTWW 394
AELK+ H WN W +RF H GY++Y+ C+ T W
Sbjct: 598 AELKRQ-HTSWNHVEGTHWYIRFSHLLNYGAGYYSYLYAKCFASTIW 643
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +2
Query: 446 WKRNIHRRFQHKWRSFFSSASPPKATPRHLKTVFWWWNRRKSGSRSQKRYPYSHPQPDKT 625
+KR HR + ++RS S SPP+ RH K + SRS R P + +
Sbjct: 146 YKRTSHRSPRRRYRSHSRSRSPPRRESRHSKVREDDLYSPRRRSRSISRSPLPRNEREYK 205
Query: 626 STRQCQ 643
S R C+
Sbjct: 206 S-RNCR 210
>At3g13890.1 68416.m01755 myb family transcription factor (MYB26)
similar to myb-related transcription factor GI:1167486
from [Lycopersicon esculentum]; contains myb DNA binding
domain: PF0049
Length = 367
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 226 FHHDCWNCIHKCCYRPMYWILQGLCLHQCYWNC--RWMIHFHHDCR 95
+ H CW+ + K + Y + G CL +C +C RW+ + D +
Sbjct: 32 YGHGCWSSVPK--HAGTYTHIHGFCLQRCGKSCRLRWINYLRPDLK 75
>At3g28840.1 68416.m03598 expressed protein
Length = 391
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -2
Query: 485 STCAGTVGGCYASIMATGTISFSAATSGRGGFFCGACISVTGTASG 348
+T G S A GT + A T+G G GA S GTA+G
Sbjct: 230 TTATGGTTAAGGSTAAGGTTASGAGTAGYGATAGGATASGAGTAAG 275
>At3g61670.1 68416.m06911 expressed protein weak similarity to
extra-large G-protein [Arabidopsis thaliana] GI:3201682
Length = 790
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 115 HFHHDCRNCIHKCCYRRMYW 56
HFHH +C H CY YW
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 229 HFHHDCWNCIHKCCYRPMYW 170
HFHH +C H CY YW
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 77 ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 166
A+ +T VV +YHP P+ L ++QTLQ
Sbjct: 497 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 526
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 77 ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 166
A+ +T VV +YHP P+ L ++QTLQ
Sbjct: 494 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 523
>At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 1280
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 446 WKRNIHRRFQHKWRSFFSSASPPKATPRHLKTVFWW 553
W R++H F+ + F S S K +HL V WW
Sbjct: 436 WWRSLH--FEFLFEGFLSCRSSNKHDLQHLMPVVWW 469
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Frame = -3
Query: 247 NCPWMIHFHHDCWNC-IHKCCYRPMYWILQGLCLHQCYWNCRWMIHFHHDCRN--CIHKC 77
NC HF DC N + C P + + +C WNCR H +C N H C
Sbjct: 59 NCKRPGHFARDCSNVSVCNNCGLPGHIAAECTAESRC-WNCREPGHVASNCSNEGICHSC 117
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 494 FSSASPPKATPRHLKTVFWWWNRRKSGSRSQKRYPYSHPQPDKTSTRQCQQ 646
FSS ++ P WW RR S S + +R P + KTST+ ++
Sbjct: 218 FSSPDENQSEPGQKAGFNWWKRRRLSFSMTWRREP-REDEVTKTSTKPSEE 267
>At1g53130.1 68414.m06016 stigma-specific Stig1 family protein
similar to stigma-specific protein STIG1 [Nicotiana
tabacum] GI:496647; contains Pfam profile PF04885:
Stigma-specific protein, Stig1
Length = 168
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 151 LHQCYWNCRWMIHFHHDCRNCIHKC 77
LH C +CR ++ ++C C HKC
Sbjct: 102 LHCCKKHCRNVLGDRNNCGRCGHKC 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,897,032
Number of Sequences: 28952
Number of extensions: 270561
Number of successful extensions: 834
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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