Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0071.Seq
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 65 5e-12
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 32 0.045
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 30 0.18
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 27 1.7
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 27 1.7
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 27 2.2
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 2.9
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 26 3.9
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 25 5.1
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 25 5.1
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 25 5.1
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 25 5.1
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 25 6.8
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 25 9.0
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 65.3 bits (152), Expect = 5e-12
Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRNXIITXLXLLXXQ---- 349
G G+++ T SPDGSLCASGG+ M WDLN+ HL++L+ I L +
Sbjct: 190 GHTGYVSAVTISPDGSLCASGGRDGTLMLWDLNESTHLYSLEAKANINALVFSPNRYWLC 249
Query: 348 XLXXXCLRTFHQDLGSGKQXDG*RAQA*NH*QTXTSKTXPPQCLSLAWSTDGQTL-SCW 175
+R F DL + ++ D K+ P+C+SL WS DGQTL S W
Sbjct: 250 AATGSSIRIF--DLETQEKVDELTVDF----VGVGKKSSEPECISLTWSPDGQTLFSGW 302
Score = 47.6 bits (108), Expect = 1e-06
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = -1
Query: 389 AXISSRALXFSXXRXWXXXAXGPSIKIWDLXSKXMVEELRXEIIN---KRXLPRQXLLSV 219
A + AL FS R W A G SI+I+DL ++ V+EL + + K P L+
Sbjct: 232 AKANINALVFSPNRYWLCAATGSSIRIFDLETQEKVDELTVDFVGVGKKSSEPECISLTW 291
Query: 218 SP*RGLLMDKPYPAGYSDNTIRVWQVS 138
SP L +G++DN IRVWQV+
Sbjct: 292 SPDGQTLF-----SGWTDNLIRVWQVT 313
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 32.3 bits (70), Expect = 0.045
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 480 PDGSLCASGGKYMKAMXWDLNDGXHLHTLDRN 385
PDGSL +SGG WDL G + LD +
Sbjct: 317 PDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEH 348
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 30.3 bits (65), Expect = 0.18
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTL 394
G +G + + T +P C S G K W+L G L TL
Sbjct: 615 GHVGRVYSVTINPSRQQCISAGTDAKIRIWNLESGELLQTL 655
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWD 424
G L +NT + D S+ ASG K WD
Sbjct: 96 GHLAQINTIRYNEDSSILASGSFDSKVRLWD 126
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 194 DKPYPAGYSDNTIRVWQVSISA 129
D PY G + NTIRV+QV SA
Sbjct: 73 DLPYLQGLNINTIRVYQVDNSA 94
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 483 SPDGSLCASGGKYMKAMXWDLNDGXHLHTL 394
S DG+LCA+ A WD+ G L TL
Sbjct: 189 SADGTLCATASYDGMARIWDVLSGQCLKTL 218
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 2.9
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = -3
Query: 480 PDGSLCASGGKYMKAMXWDLNDGXHLHTLD-RNXIITXLXLLXXQXLXXXCLRTFH-QDL 307
P+ ++C SG WDL+ G + L+ + +T L + + + T DL
Sbjct: 557 PERNICISGSMDKSIRVWDLSTGTCKYVLEGHDAFVTLLNVFQNRLISGSADSTIRIWDL 616
Query: 306 GSGK 295
+GK
Sbjct: 617 NTGK 620
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.8 bits (54), Expect = 3.9
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 194 DKPYPAGYSDNTIRVWQ 144
D+ Y GY+D +IR+W+
Sbjct: 76 DEMYAVGYADGSIRLWK 92
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDL 421
G G +NT S DG SG + + WD+
Sbjct: 43 GHTGCVNTLDWSADGEFLLSGSDDTRLIVWDV 74
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGK--YMKAMXWDLNDGXHLHTL 394
G G +NT P G+ ASGG+ Y++ +D N +TL
Sbjct: 286 GHFGPINTIAVHPKGTGYASGGEDGYVRVHFFDKNYFDFKYTL 328
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1
Query: 332 AXGPSIKIWDL 300
A GPSIK+WDL
Sbjct: 225 AGGPSIKVWDL 235
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 495 TXTXSPDGSLCASGGKYMKAMXWDL 421
T + P+G++ A+GG+ A WD+
Sbjct: 305 TGSWHPNGNILATGGQDTTAKVWDI 329
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 501 LNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRN 385
L+T S DG +G K WD+N G + T ++
Sbjct: 342 LSTLQYSSDGQRIITGADDGKIKVWDMNSGFCIVTFTQH 380
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 301 WXAXRWLKSSGXKSLTNANF 242
W + RW+KS +SLT +F
Sbjct: 433 WTSDRWVKSKIEESLTGPSF 452
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,605,320
Number of Sequences: 5004
Number of extensions: 23390
Number of successful extensions: 91
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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