Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0071.Seq
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0303 + 28324155-28325045,28326208-28326321 57 7e-09
05_07_0039 - 27239362-27239478,27240570-27241463 56 1e-08
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 30 1.3
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504... 29 3.0
03_02_0420 - 8298303-8299265,8299351-8299431,8299546-8299668,829... 29 3.0
10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838... 28 3.9
03_05_0378 - 23619169-23619225,23619389-23619454,23620052-236202... 28 3.9
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536... 28 3.9
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440... 28 3.9
06_03_1454 - 30261240-30261470,30261896-30262615,30262700-302628... 27 6.8
06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474... 27 6.8
03_05_0969 + 29283905-29284570,29284862-29284930,29286533-292866... 27 6.8
03_02_0614 + 9863622-9863675,9864353-9864604,9865125-9865268,986... 27 9.0
>01_06_0303 + 28324155-28325045,28326208-28326321
Length = 334
Score = 57.2 bits (132), Expect = 7e-09
Identities = 40/111 (36%), Positives = 49/111 (44%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRNXIITXLXLLXXQXLXX 337
G G++N SPDGSLCASGGK + WDL +G L++LD II L +
Sbjct: 207 GHGGYVNAVAVSPDGSLCASGGKDGVTLLWDLAEGKRLYSLDAGSIIHSLCFSPNR--YW 264
Query: 336 XCLRTFHQDLGSGKQXDG*RAQA*NH*QTXTSKTXPPQCLSLAWSTDGQTL 184
C T QD + + SK C SL WS DG TL
Sbjct: 265 LCAAT--QDSIKIWDLESKHIVQDLKPEIPVSKNQMLYCTSLNWSADGSTL 313
Score = 49.6 bits (113), Expect = 1e-06
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = -1
Query: 371 ALXFSXXRXWXXXAXGPSIKIWDLXSKXMVEELRXEI-INKRXLPRQXLLSVSP*RGLLM 195
+L FS R W A SIKIWDL SK +V++L+ EI ++K + L+ S L
Sbjct: 255 SLCFSPNRYWLCAATQDSIKIWDLESKHIVQDLKPEIPVSKNQMLYCTSLNWSADGSTLY 314
Query: 194 DKPYPAGYSDNTIRVWQVS 138
AGY+D TIR++++S
Sbjct: 315 -----AGYTDGTIRIYKIS 328
>05_07_0039 - 27239362-27239478,27240570-27241463
Length = 336
Score = 56.4 bits (130), Expect = 1e-08
Identities = 38/111 (34%), Positives = 49/111 (44%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRNXIITXLXLLXXQXLXX 337
G G++N SPDGSLCASGGK + WDL +G L+ LD II L +
Sbjct: 208 GHNGYVNAVAVSPDGSLCASGGKDGTTLLWDLTEGKMLYKLDAGAIIHSLCFSPNR--YW 265
Query: 336 XCLRTFHQDLGSGKQXDG*RAQA*NH*QTXTSKTXPPQCLSLAWSTDGQTL 184
C T +D + + K+ C SL+WS DG TL
Sbjct: 266 LCAAT--EDSVKIWDLESKLVMQDLKPEVQAFKSQMLYCTSLSWSADGSTL 314
Score = 50.0 bits (114), Expect = 1e-06
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = -1
Query: 371 ALXFSXXRXWXXXAXGPSIKIWDLXSKXMVEELRXEI-INKRXLPRQXLLSVSP*RGLLM 195
+L FS R W A S+KIWDL SK ++++L+ E+ K + LS S L
Sbjct: 256 SLCFSPNRYWLCAATEDSVKIWDLESKLVMQDLKPEVQAFKSQMLYCTSLSWSADGSTLF 315
Query: 194 DKPYPAGYSDNTIRVWQVS 138
AGY+D TIRVW+VS
Sbjct: 316 -----AGYTDGTIRVWKVS 329
>01_06_0923 +
33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLH 400
G G + T +PDG +GG+ WDL G LH
Sbjct: 238 GHRGAIRTIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLH 276
>04_04_1592 -
34649484-34649547,34650118-34650186,34650325-34650444,
34650630-34650742,34650824-34650898,34651224-34651346,
34651427-34651446,34652354-34652410,34652922-34653860,
34653961-34654189,34654296-34654439,34654527-34654601,
34655363-34655433,34656103-34656205,34656407-34656633,
34656791-34656908,34657239-34657369,34657709-34657802
Length = 923
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 501 LNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLH 400
+N +PDG SGG+ WDL G LH
Sbjct: 168 VNAIRFTPDGRWVVSGGEDNVVKLWDLTAGKLLH 201
>03_02_0420 -
8298303-8299265,8299351-8299431,8299546-8299668,
8299815-8299983,8300108-8300478
Length = 568
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = -1
Query: 242 PRQXLLSVSP*RGLLMDKPY---PAGYSD 165
PR+ L+S++P RG D PY PA Y D
Sbjct: 451 PREPLVSLAPQRGQYRDPPYRRDPAAYRD 479
>10_08_0491 -
18283404-18283482,18283590-18283658,18283767-18283883,
18283953-18284068,18284149-18284223,18284248-18284430,
18284530-18284591,18284668-18285606,18285723-18285846,
18285917-18286060,18286151-18286225,18286359-18286382,
18287025-18287095,18287305-18287407,18287555-18287781,
18287910-18288027,18288220-18288311,18288793-18288874
Length = 899
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLH 400
G ++ +PDG SGG WDL G LH
Sbjct: 146 GHTRRIDVLRFTPDGRWIVSGGSDNSVKIWDLTAGKLLH 184
>03_05_0378 -
23619169-23619225,23619389-23619454,23620052-23620224,
23620454-23620664,23621056-23621280,23622157-23622493,
23624200-23624627
Length = 498
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTL--DRNXIITXLXLLXXQXL 343
G G ++ + PD S SG K M W+ D +++ L +N ++T L + L
Sbjct: 259 GHRGAISCLSFGPDSSELFSGSFDRKIMQWNAEDRTYMNCLFGHQNEVLTMDALSKDRLL 318
Query: 342 XXXCLRTFH 316
RT H
Sbjct: 319 TVARDRTMH 327
>03_02_1033 +
13550955-13551700,13552837-13553290,13553451-13553648,
13553726-13553807,13554496-13554590
Length = 524
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = -3
Query: 480 PDGSLCASGGKYMKAMXWDLNDGXHLHTL 394
PDGSL AS G A WDL G TL
Sbjct: 366 PDGSLAASCGLDAYARVWDLRSGRLWGTL 394
>03_02_1031 +
13541327-13542072,13543209-13543662,13543823-13544020,
13544098-13544179,13544868-13544962
Length = 524
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = -3
Query: 480 PDGSLCASGGKYMKAMXWDLNDGXHLHTL 394
PDGSL AS G A WDL G TL
Sbjct: 366 PDGSLAASCGLDAYARVWDLRSGRLWGTL 394
>06_03_1454 -
30261240-30261470,30261896-30262615,30262700-30262843,
30262953-30263204,30263542-30263751
Length = 518
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 507 GHLNTXTXSPDGSLCASGGKYMKAMXWDLNDG 412
G +NT + + DGSL SG A+ W+ +G
Sbjct: 87 GCVNTISFNEDGSLLLSGSDDRAAVLWNWQEG 118
>06_03_0940 +
26145746-26145879,26146740-26146821,26147349-26147427,
26147527-26147624,26148392-26148479,26148589-26148686,
26148881-26148982,26149237-26149281,26150535-26150574,
26150988-26151074,26151254-26151330,26151746-26151808,
26152650-26152766,26152905-26153116,26153690-26153785,
26153869-26153935,26154028-26154081
Length = 512
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 483 SPDGSLCASGGKYMKAMXWDLNDG 412
SPDG ASG + M WDL+ G
Sbjct: 417 SPDGRYMASGDEDGTIMMWDLSSG 440
>03_05_0969 +
29283905-29284570,29284862-29284930,29286533-29286631,
29287016-29287324
Length = 380
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 483 SPDGSLCASGGKYMKAMXWDLNDG 412
SPDG L AS WDL DG
Sbjct: 71 SPDGRLIASASDDRTVRIWDLGDG 94
>03_02_0614 +
9863622-9863675,9864353-9864604,9865125-9865268,
9865350-9866024,9866117-9866317,9866446-9866646
Length = 508
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWD 424
G G +NT + +P G+L SG M + WD
Sbjct: 32 GHDGCVNTVSFNPAGNLLVSGSDDMDIILWD 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,883,470
Number of Sequences: 37544
Number of extensions: 164045
Number of successful extensions: 357
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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