Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0071.Seq
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42943| Best HMM Match : WD40 (HMM E-Value=0)                        66   1e-11
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_25209| Best HMM Match : Astacin (HMM E-Value=7.69999e-41)           30   1.00 
SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11)                  29   2.3  
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_6741| Best HMM Match : WD40 (HMM E-Value=0)                         28   4.0  
SB_24139| Best HMM Match : WD40 (HMM E-Value=8.29989e-42)              28   4.0  
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  

>SB_42943| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 273

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 30/47 (63%), Positives = 34/47 (72%)
 Frame = -3

Query: 507 GHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRNXIITXL 367
           G+LN  T SPDGSLCASGGK  +AM WDLNDG HL+TL    II  +
Sbjct: 202 GYLNCVTVSPDGSLCASGGKDGQAMLWDLNDGKHLYTLSGGDIINAM 248



 Score = 31.9 bits (69), Expect = 0.33
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -1

Query: 371 ALXFSXXRXWXXXAXGPSIKIW 306
           A+ FS  R W   A GPSIKIW
Sbjct: 247 AMTFSPNRYWLCAAVGPSIKIW 268


>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1649

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 16/53 (30%), Positives = 20/53 (37%)
 Frame = -3

Query: 516  GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRNXIITXLXLL 358
            G  G  N  +  P G    S G +     WDL  G   H    +  IT L +L
Sbjct: 1535 GHWGRYNVVSFFPQGDQVVSNGHHFTLKQWDLGSGRIKHIYPHSNEITTLCVL 1587


>SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -3

Query: 516 GSLGH---LNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHT 397
           GS GH   +     + DG   ASGGK      WD +   H+HT
Sbjct: 109 GSKGHKEQILALAITTDGKYLASGGKDKLIRIWDPDTSKHIHT 151


>SB_25209| Best HMM Match : Astacin (HMM E-Value=7.69999e-41)
          Length = 533

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 281 EELRXEIINKRXLPRQXLLSVSP*RGLLMDKPYPAGYSDNTIRVWQVSI 135
           EE R   +    +     + +S   G +    YP  Y DNT  +WQ+S+
Sbjct: 368 EEKRIGFLLDYRITSSCYIMLSDLNGTISSPGYPTPYPDNTDCIWQISV 416


>SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11)
          Length = 256

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWD 424
           G    ++T + SPDG+L ASGG       WD
Sbjct: 179 GHTDTIHTMSFSPDGTLLASGGMDGAVRVWD 209


>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1803

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 483  SPDGSLCASGGKYMKAMXWDLNDGXHLHTLD 391
            SPDG L AS G     + WD++ G   +T +
Sbjct: 1380 SPDGMLLASTGADSNVIIWDISTGERRYTFN 1410



 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -3

Query: 489  TXSPDGSLCASGGKYMKAMXWDLNDGXHLHTL 394
            T S D SL ASGG  +K   W    G   H L
Sbjct: 1555 TFSHDASLVASGGDELKIRVWSRETGVDQHVL 1586


>SB_6741| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 714

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 504 HLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLD 391
           H+N+ + SP G+L A+       M W+L  G  L  L+
Sbjct: 58  HVNSCSVSPFGTLMATASTDSTLMLWNLETGECLAVLE 95


>SB_24139| Best HMM Match : WD40 (HMM E-Value=8.29989e-42)
          Length = 198

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 504 HLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLD 391
           H+N+ + SP G+L A+       M W+L  G  L  L+
Sbjct: 58  HVNSCSVSPFGTLMATASTDSTLMLWNLETGECLAVLE 95


>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 24/79 (30%), Positives = 35/79 (44%)
 Frame = -1

Query: 368 LXFSXXRXWXXXAXGPSIKIWDLXSKXMVEELRXEIINKRXLPRQXLLSVSP*RGLLMDK 189
           L F+  +     A   SIK+WD       +    +II    L     L++ P    +M  
Sbjct: 191 LFFNPLKYLITAARDGSIKVWD-------DTGNVKIIFIGHLKAVNTLAIYPFGSYIM-- 241

Query: 188 PYPAGYSDNTIRVWQVSIS 132
              +G SDNTIRVW + +S
Sbjct: 242 ---SGSSDNTIRVWSLDMS 257


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,215,471
Number of Sequences: 59808
Number of extensions: 174224
Number of successful extensions: 388
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)