Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0071.Seq
(518 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U96491-1|AAB72148.1| 318|Drosophila melanogaster RACK1 protein. 94 9e-20
AY071661-1|AAL49283.1| 318|Drosophila melanogaster RE74715p pro... 94 9e-20
AE014134-1351|AAF52566.1| 318|Drosophila melanogaster CG7111-PA... 94 9e-20
AY089556-1|AAL90294.1| 819|Drosophila melanogaster LD44201p pro... 30 2.2
AF223065-1|AAF34688.1| 823|Drosophila melanogaster putative mic... 30 2.2
AE014298-2339|AAF48570.3| 819|Drosophila melanogaster CG13956-P... 30 2.2
AE014298-2338|AAF48571.2| 819|Drosophila melanogaster CG13956-P... 30 2.2
BT016079-1|AAV36964.1| 922|Drosophila melanogaster LD47749p pro... 29 3.8
AY052114-1|AAK93538.1| 922|Drosophila melanogaster SD06427p pro... 29 3.8
AE014297-1680|AAF54941.1| 922|Drosophila melanogaster CG9799-PA... 29 3.8
>U96491-1|AAB72148.1| 318|Drosophila melanogaster RACK1 protein.
Length = 318
Score = 94.3 bits (224), Expect = 9e-20
Identities = 54/113 (47%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRNXIITXLXLLXXQXLXX 337
G G+LNT T SPDGSLC SGGK KA+ WDLNDG +L+TL+ N II L +
Sbjct: 191 GHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHNDIINALCFSPNRYWLC 250
Query: 336 XCLRTFHQ--DLGSGKQXDG*RAQA*NH*QTXTSKTXPPQCLSLAWSTDGQTL 184
+ DL K + R + + TSK PQCLSLAWSTDGQTL
Sbjct: 251 VAYGPSIKIWDLACKKTVEELRPEV----VSPTSKADQPQCLSLAWSTDGQTL 299
Score = 72.9 bits (171), Expect = 2e-13
Identities = 44/84 (52%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = -1
Query: 371 ALXFSXXRXWXXXAXGPSIKIWDLXSKXMVEELRXEII---NKRXLPRQXLLSVSP*RGL 201
AL FS R W A GPSIKIWDL K VEELR E++ +K P+ L+ S
Sbjct: 239 ALCFSPNRYWLCVAYGPSIKIWDLACKKTVEELRPEVVSPTSKADQPQCLSLAWSTDGQT 298
Query: 200 LMDKPYPAGYSDNTIRVWQVSISA 129
L AGYSDNTIRVWQVS+SA
Sbjct: 299 LF-----AGYSDNTIRVWQVSVSA 317
>AY071661-1|AAL49283.1| 318|Drosophila melanogaster RE74715p
protein.
Length = 318
Score = 94.3 bits (224), Expect = 9e-20
Identities = 54/113 (47%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRNXIITXLXLLXXQXLXX 337
G G+LNT T SPDGSLC SGGK KA+ WDLNDG +L+TL+ N II L +
Sbjct: 191 GHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHNDIINALCFSPNRYWLC 250
Query: 336 XCLRTFHQ--DLGSGKQXDG*RAQA*NH*QTXTSKTXPPQCLSLAWSTDGQTL 184
+ DL K + R + + TSK PQCLSLAWSTDGQTL
Sbjct: 251 VAYGPSIKIWDLACKKTVEELRPEV----VSPTSKADQPQCLSLAWSTDGQTL 299
Score = 72.9 bits (171), Expect = 2e-13
Identities = 44/84 (52%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = -1
Query: 371 ALXFSXXRXWXXXAXGPSIKIWDLXSKXMVEELRXEII---NKRXLPRQXLLSVSP*RGL 201
AL FS R W A GPSIKIWDL K VEELR E++ +K P+ L+ S
Sbjct: 239 ALCFSPNRYWLCVAYGPSIKIWDLACKKTVEELRPEVVSPTSKADQPQCLSLAWSTDGQT 298
Query: 200 LMDKPYPAGYSDNTIRVWQVSISA 129
L AGYSDNTIRVWQVS+SA
Sbjct: 299 LF-----AGYSDNTIRVWQVSVSA 317
>AE014134-1351|AAF52566.1| 318|Drosophila melanogaster CG7111-PA
protein.
Length = 318
Score = 94.3 bits (224), Expect = 9e-20
Identities = 54/113 (47%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRNXIITXLXLLXXQXLXX 337
G G+LNT T SPDGSLC SGGK KA+ WDLNDG +L+TL+ N II L +
Sbjct: 191 GHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHNDIINALCFSPNRYWLC 250
Query: 336 XCLRTFHQ--DLGSGKQXDG*RAQA*NH*QTXTSKTXPPQCLSLAWSTDGQTL 184
+ DL K + R + + TSK PQCLSLAWSTDGQTL
Sbjct: 251 VAYGPSIKIWDLACKKTVEELRPEV----VSPTSKADQPQCLSLAWSTDGQTL 299
Score = 72.9 bits (171), Expect = 2e-13
Identities = 44/84 (52%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = -1
Query: 371 ALXFSXXRXWXXXAXGPSIKIWDLXSKXMVEELRXEII---NKRXLPRQXLLSVSP*RGL 201
AL FS R W A GPSIKIWDL K VEELR E++ +K P+ L+ S
Sbjct: 239 ALCFSPNRYWLCVAYGPSIKIWDLACKKTVEELRPEVVSPTSKADQPQCLSLAWSTDGQT 298
Query: 200 LMDKPYPAGYSDNTIRVWQVSISA 129
L AGYSDNTIRVWQVS+SA
Sbjct: 299 LF-----AGYSDNTIRVWQVSVSA 317
>AY089556-1|AAL90294.1| 819|Drosophila melanogaster LD44201p
protein.
Length = 819
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDL 421
G + H+N+ SPDG AS G + WD+
Sbjct: 143 GHMSHVNSVKFSPDGLWIASAGLEGSILIWDI 174
>AF223065-1|AAF34688.1| 823|Drosophila melanogaster putative
microtubule severingprotein katanin p80 subunit protein.
Length = 823
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDL 421
G + H+N+ SPDG AS G + WD+
Sbjct: 143 GHMSHVNSVKFSPDGLWIASAGLEGSILIWDI 174
>AE014298-2339|AAF48570.3| 819|Drosophila melanogaster CG13956-PB,
isoform B protein.
Length = 819
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDL 421
G + H+N+ SPDG AS G + WD+
Sbjct: 143 GHMSHVNSVKFSPDGLWIASAGLEGSILIWDI 174
>AE014298-2338|AAF48571.2| 819|Drosophila melanogaster CG13956-PA,
isoform A protein.
Length = 819
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDL 421
G + H+N+ SPDG AS G + WD+
Sbjct: 143 GHMSHVNSVKFSPDGLWIASAGLEGSILIWDI 174
>BT016079-1|AAV36964.1| 922|Drosophila melanogaster LD47749p
protein.
Length = 922
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 368 LXFSXXRXWXXXAXGPS-IKIWDLXSKXMVEELRXE 264
L FS W A S IK+WD+ S MV+ R E
Sbjct: 589 LTFSPDSRWLITAAMDSTIKVWDIPSSYMVDHFRVE 624
>AY052114-1|AAK93538.1| 922|Drosophila melanogaster SD06427p
protein.
Length = 922
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 368 LXFSXXRXWXXXAXGPS-IKIWDLXSKXMVEELRXE 264
L FS W A S IK+WD+ S MV+ R E
Sbjct: 589 LTFSPDSRWLITAAMDSTIKVWDIPSSYMVDHFRVE 624
>AE014297-1680|AAF54941.1| 922|Drosophila melanogaster CG9799-PA
protein.
Length = 922
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 368 LXFSXXRXWXXXAXGPS-IKIWDLXSKXMVEELRXE 264
L FS W A S IK+WD+ S MV+ R E
Sbjct: 589 LTFSPDSRWLITAAMDSTIKVWDIPSSYMVDHFRVE 624
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,769,184
Number of Sequences: 53049
Number of extensions: 259058
Number of successful extensions: 781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1908489216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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