Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0071.Seq
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-1|CAA93514.1|  325|Caenorhabditis elegans Hypothetical pr...    87   9e-18
AJ320257-1|CAC44622.1|  877|Caenorhabditis elegans putative telo...    27   6.1  
AF400665-1|AAL28024.1|  877|Caenorhabditis elegans CLK-2 protein.      27   6.1  
AC006605-5|AAK85444.3|  877|Caenorhabditis elegans Clock (biolog...    27   6.1  
U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z69664-1|CAA93514.1|  325|Caenorhabditis elegans Hypothetical
           protein K04D7.1 protein.
          Length = 325

 Score = 86.6 bits (205), Expect = 9e-18
 Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
 Frame = -3

Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRNXIITXLXLLXXQXLXX 337
           G  G++NT T SPDGSLCASGGK  +AM WDLN+G HL+TL  N +I  +     +    
Sbjct: 196 GHTGYVNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLPGNDVINAMSFSPNRYWLC 255

Query: 336 XCLRTFHQ--DLGSGKQXDG*RAQA*NH*QTXTSKTXPPQCLSLAWSTDGQTL 184
             + +  +  DL   K+ +  + +  +   + +S+   PQC+SLAWS DGQTL
Sbjct: 256 AAVGSSIKIWDLEDKKEIEELKPEIAS---SGSSRGSSPQCISLAWSQDGQTL 305



 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 37/85 (43%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
 Frame = -1

Query: 371 ALXFSXXRXWXXXAXGPSIKIWDLXSKXMVEELRXEIIN----KRXLPRQXLLSVSP*RG 204
           A+ FS  R W   A G SIKIWDL  K  +EEL+ EI +    +   P+   L+ S    
Sbjct: 244 AMSFSPNRYWLCAAVGSSIKIWDLEDKKEIEELKPEIASSGSSRGSSPQCISLAWSQDGQ 303

Query: 203 LLMDKPYPAGYSDNTIRVWQVSISA 129
            L      AGY+DN IRV+QVSI A
Sbjct: 304 TLF-----AGYTDNIIRVYQVSIRA 323


>AJ320257-1|CAC44622.1|  877|Caenorhabditis elegans putative
           telomere binding protein protein.
          Length = 877

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -3

Query: 510 LGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRNXIITXL 367
           L H +  T +P  S   SGG YMK +   ++ G ++   +++ ++  +
Sbjct: 179 LAHDDIVTAAPFTSFYGSGGPYMKTVAEIISSGRNIDITNKDGLLVQM 226


>AF400665-1|AAL28024.1|  877|Caenorhabditis elegans CLK-2 protein.
          Length = 877

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -3

Query: 510 LGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRNXIITXL 367
           L H +  T +P  S   SGG YMK +   ++ G ++   +++ ++  +
Sbjct: 179 LAHDDIVTAAPFTSFYGSGGPYMKTVAEIISSGRNIDITNKDGLLVQM 226


>AC006605-5|AAK85444.3|  877|Caenorhabditis elegans Clock
           (biological timing) abnormalityprotein 2 protein.
          Length = 877

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -3

Query: 510 LGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRNXIITXL 367
           L H +  T +P  S   SGG YMK +   ++ G ++   +++ ++  +
Sbjct: 179 LAHDDIVTAAPFTSFYGSGGPYMKTVAEIISSGRNIDITNKDGLLVQM 226


>U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical
           protein F55F8.3 protein.
          Length = 910

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 501 LNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRN 385
           + T   SPDGSL A+G +  K   W+        T D +
Sbjct: 363 ITTAEYSPDGSLMATGAEDGKVKIWNSRSSFCTVTFDEH 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,884,314
Number of Sequences: 27780
Number of extensions: 128124
Number of successful extensions: 282
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)