BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0070.Seq (648 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_14562| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3 SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7 SB_43250| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5 SB_2051| Best HMM Match : LicD (HMM E-Value=1.7e-07) 27 9.9 >SB_14562| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 237 Score = 28.7 bits (61), Expect = 4.3 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -3 Query: 622 ANPYFMTRCDESLRNDGIFYGC 557 + PYF+ ES R D IF GC Sbjct: 136 SRPYFLPELSESSRTDWIFMGC 157 >SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3934 Score = 28.3 bits (60), Expect = 5.7 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 393 TKESRTETAFKLSSTVRTRSVSIDEADN 476 TKE+ ET+ KLS T + RS + E D+ Sbjct: 3164 TKENLEETSTKLSETEKLRSSEVSERDS 3191 >SB_43250| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 329 Score = 27.9 bits (59), Expect = 7.5 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -2 Query: 617 SLFYDTLRRKFEKRWHILWVLV 552 ++F+ TL K E WH+ W+LV Sbjct: 25 AIFWVTLVTKQESLWHLSWILV 46 >SB_2051| Best HMM Match : LicD (HMM E-Value=1.7e-07) Length = 328 Score = 27.5 bits (58), Expect = 9.9 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +1 Query: 454 CP*MKRIISFMCTLSLSGPGCPNVRHKLSSA 546 CP R + C L G CP++RH SS+ Sbjct: 89 CPRSYRELGGKCNLGKEGFDCPDIRHTGSSS 119 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,321,220 Number of Sequences: 59808 Number of extensions: 288614 Number of successful extensions: 473 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 444 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 473 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1645141000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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