Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0067.Seq
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    25   0.45 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   4.2  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   4.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   4.2  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 460 LTLEKEGYKSDYDRNEYEERGSEHQEDNDSD 368
           L +EKE  K   D    EE+  E  ED D D
Sbjct: 213 LVVEKEREKELSDDEAEEEKKEEEGEDKDKD 243


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 354 KVPNTKNTVKRKSMKNVGPTT 292
           K+PNTKN  ++ +   V  TT
Sbjct: 293 KLPNTKNVRRKTNPAGVTTTT 313


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 236 ERKEVEGEYEKDYE 195
           E+ + EGEY K YE
Sbjct: 106 EKYDKEGEYRKKYE 119


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 354 KVPNTKNTVKRKSMKNVGPTT 292
           K+PNTKN  ++ +   V  TT
Sbjct: 293 KLPNTKNVRRKTNPAGVTTTT 313


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,312
Number of Sequences: 336
Number of extensions: 1205
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)