Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0067.Seq
(568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 27 1.9
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 26 4.4
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.4
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 26 4.4
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 25 5.9
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 7.7
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 7.7
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 7.7
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 7.7
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 25 7.7
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 1.9
Identities = 24/81 (29%), Positives = 39/81 (48%)
Frame = -1
Query: 265 SAERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRW 86
SA+ + KEKKSK +K K K +AD I ++ + K KKG + ++ S
Sbjct: 61 SADEEASVKRKEKKSKHEHKKHKKDK-PSADKDRISKKDK---KKSKKGKSKTK-EESIE 115
Query: 85 VNPA*RSRIIQNRIPTRKSRN 23
+N ++I Q I + + N
Sbjct: 116 INAEEGAKIAQPAIGSANASN 136
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -1
Query: 247 QREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQK 125
++E KEKK+ ++ + GK+ +P + E+ K+ K
Sbjct: 209 KKEEKEKKTAVDVSDSVNGKKRKTEPAGEGEQTEKKSKSTK 249
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 4.4
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = -1
Query: 262 AERRNQREVKEKKSKA-NMRKTTKGKRT-TADPPN------IQREKERVWKNQKKGTASS 107
A R + E K+ SKA ++ + KR+ P N IQR +ER+ + K T
Sbjct: 394 AARAKENEAKDLYSKAESITQDLNAKRSHPPQPANLDYSSAIQRAQERLTLEESKLTDLR 453
Query: 106 RLSPSRWVN 80
PS++VN
Sbjct: 454 TAEPSQYVN 462
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 4.4
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Frame = -1
Query: 247 QREVKEKKSKANMRKTTKGKRTTADPPNIQREKE-----RVWKNQKKGTASSRLSPSR 89
+R+ KEKK ++ K K A QR +E R K KKG A + PS+
Sbjct: 174 RRKEKEKKKSSDAWKERKDNEKKAMLMRQQRREENLKKRRESKKSKKGKAPKKKKPSK 231
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 5.9
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -1
Query: 265 SAERRNQREVKEKKSKANMRKTTKGKR----TTADPPNIQREKERVWKNQKK 122
S E + R+VKEK + N + +G+R Q+E ER K+ +K
Sbjct: 49 SMEEDDHRQVKEKNTSENSVEQKRGRRMFGALLGTLGKFQQESEREQKSARK 100
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 235 KEKKSKANMRKTTKGKRTTADPPNIQREKE 146
K+K + N +K KGK T + P ++E
Sbjct: 518 KDKDASRNNKKNKKGKHTQIEDPTAASKEE 547
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 229 KKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASS 107
K+ K N+ T G T N +EK R WK + + +S
Sbjct: 160 KERKINIELTAGGGGKTEARMNKIKEKNRKWKEEMRQRVAS 200
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 178 ADPPNIQREKERVWKNQKKGTASSRLSPSRWVNP 77
A P I+++ R+W + K+G S L R ++P
Sbjct: 177 AAQPTIRKDGLRLWGSWKRGKDESDLPEKRLLSP 210
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/51 (23%), Positives = 30/51 (58%)
Frame = -1
Query: 274 NGISAERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKK 122
NG SAE ++++++++++ + + +R + QRE+E+ + Q+K
Sbjct: 69 NG-SAEAGKEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEK 118
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 25.0 bits (52), Expect = 7.7
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -1
Query: 307 RRT--HDKFSIGKN-GISAERRNQREVKEKKSKANMRKTTKGKRTTAD 173
RRT H + +G N + E+RNQR ++A K K KR ++
Sbjct: 73 RRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDKRAASE 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,424,125
Number of Sequences: 5004
Number of extensions: 20375
Number of successful extensions: 88
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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