Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0067.Seq
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0461 - 23125260-23125868 31 0.85
01_05_0151 + 18618340-18618419,18619756-18620116 30 1.1
01_01_0012 + 71903-72935,73468-73981,74619-76008 30 1.1
03_02_0392 - 8070342-8071628 29 2.0
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 29 2.0
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 29 2.6
12_01_0388 + 3059296-3060076,3060290-3061474,3061565-3061695,306... 29 3.4
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 29 3.4
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990... 29 3.4
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 28 4.5
03_06_0713 - 35687672-35689219 28 6.0
06_02_0013 - 10581449-10585105 27 7.9
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 27 7.9
>02_04_0461 - 23125260-23125868
Length = 202
Score = 30.7 bits (66), Expect = 0.85
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 262 AERRNQREVKEKKSKAN-MRKTTKGKRTTADPPNIQREKERVWKNQKK 122
A +R QRE +EK+ K N +R TK +R T +P IQ+ + + Q K
Sbjct: 131 AAKRKQREEREKRKKENVLRSGTKLQRVT-NPKTIQKIAKSKKRKQLK 177
>01_05_0151 + 18618340-18618419,18619756-18620116
Length = 146
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = -1
Query: 295 DKFSIGKNGISAERRNQREVKEKK--SKANMRKTTKGKRTTADP-PNIQREKE 146
DK++ K +S ++++ KEKK S++N RK KGK T P REK+
Sbjct: 57 DKYNSSKRSVSLVQKHKESKKEKKKRSRSNERK-KKGKGTINHPWKPCDREKD 108
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 30.3 bits (65), Expect = 1.1
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = -1
Query: 265 SAERRNQ-REV--KEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSP 95
S+ RRN+ R + + KKS + ++ K R + P+ R R S+LSP
Sbjct: 597 SSSRRNRSRSISPRHKKSSRSDSRSPKRHREESLSPSKSRRSARAGSRSPGQHKGSKLSP 656
Query: 94 SRWVNPA*RSRIIQNRIPTRKSRNWKRK 11
+R + + RSR ++R K+RN +K
Sbjct: 657 TRDHHSSRRSRRSRSR-SQEKNRNSDKK 683
>03_02_0392 - 8070342-8071628
Length = 428
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 304 RTHDKFSIGKNGISAERRNQREVKEKKSKANMRKTTK 194
RT D+ S + S ERR +REV+EK + K K
Sbjct: 263 RTEDRDSSSRQKRSGERRAEREVQEKDRNSRHTKQVK 299
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 29.5 bits (63), Expect = 2.0
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Frame = -1
Query: 277 KNGISAERRNQREVKEK-KSKANMRKTTKGKRTTADPPNIQREKE--RVWKNQKKGTASS 107
K+ A+++ ++E+K+K K +A MRK K ++ A +REKE + K Q+K +
Sbjct: 332 KDTQKAQKQVEKELKQKEKEEARMRKQQKKQQEEALREQKRREKEEAEMKKQQRKQEEEA 391
Query: 106 RLSPSRWVNPA*RSRIIQNRIPTRKSRNWKRK 11
+ R +R Q + + KR+
Sbjct: 392 QKEQKRREKEEAETRKQQKKQQEEAEKEQKRR 423
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -1
Query: 265 SAERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKK 122
S +RR+ +++ ++S R +R REKE+ W+ QK+
Sbjct: 154 SGKRRSDKDLGRRESSGQYRDDRDRERERDREKERDREKEKEWERQKE 201
>12_01_0388 +
3059296-3060076,3060290-3061474,3061565-3061695,
3061793-3061873,3062329-3062367
Length = 738
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -1
Query: 277 KNGISAERRNQREVKEKKSKANMRKTTKGK---RTTADPPN 164
K+G E+R ++ K++KS N+++ + DPPN
Sbjct: 636 KDGSKVEKRKKKSAKQEKSSRNVKQAVSSQTADTVLVDPPN 676
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 454 LEKEGYKSDYDRNEYEERGSEHQEDND 374
+E + YKSD D N YE+ E+ +D+D
Sbjct: 676 IEGQDYKSD-DENAYEDDDEEYDDDDD 701
>04_04_0596 -
26497863-26497913,26498010-26498081,26499015-26499093,
26499440-26499553,26499822-26499871,26500353-26500398,
26501100-26501719
Length = 343
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = -1
Query: 256 RRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRW 86
RR +RE +E++ + ++ K K + ++EK++ K +KK + W
Sbjct: 139 RRKEREEEERRRRRKDKERRKRKEKERERERKKKEKKKRRKEEKKNLGKKAAVTNSW 195
>12_02_0792 - 23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -1
Query: 223 SKANMRKTTKGKR---TTADPPNIQREKERVWKNQKKG 119
SKA+ RK KG+ +T+D PN + K+ V Q+KG
Sbjct: 887 SKADRRKLKKGQNVGDSTSDSPNGEAAKKPVNSQQEKG 924
>03_06_0713 - 35687672-35689219
Length = 515
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 310 LHTFPLHRIFRIRNLCCMSRRCRYPPGVQIRVLHIH 417
LH P + R+R L +S RY P + R+LH+H
Sbjct: 83 LHPSPRRNLARLRRLLSVSLLRRY-PALARRLLHLH 117
>06_02_0013 - 10581449-10585105
Length = 1218
Score = 27.5 bits (58), Expect = 7.9
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Frame = -1
Query: 295 DKFSIGKNGIS------AERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWK 134
D F K+GIS A+ ++KE+ + N KTT + + DP N + + V
Sbjct: 555 DDFKTLKDGISDPEPQSADSHQVTDMKEQSTMTNDLKTTDTEGSMPDPDNRSTDSQHVIN 614
Query: 133 NQKKGTASSRLSPSRWVNP 77
++ +SS P V P
Sbjct: 615 KMEQ--SSSTDEPGTVVTP 631
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = -1
Query: 289 FSIGKNGISAER--RNQREVKEKKSKANMRKTTKGKRTTAD 173
FS K ++ +R +++E+K+KKS +K TKGK +A+
Sbjct: 539 FSRKKKSVTPKRPSSSEKEIKDKKSSG--KKVTKGKGESAE 577
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,099,259
Number of Sequences: 37544
Number of extensions: 132182
Number of successful extensions: 722
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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