Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0067.Seq
(568 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 30 4.9
AF490258-1|AAO85466.1| 667|Homo sapiens XTP9 protein. 30 4.9
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 30 4.9
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 30 4.9
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 30 4.9
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 30 4.9
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 30 4.9
AB046765-1|BAB13371.2| 968|Homo sapiens KIAA1545 protein protein. 30 6.5
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 30.3 bits (65), Expect = 4.9
Identities = 21/83 (25%), Positives = 35/83 (42%)
Frame = -1
Query: 262 AERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 83
A R R + ++ R T+ + + P R + R ++ T S SR
Sbjct: 579 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 638
Query: 82 NPA*RSRIIQNRIPTRKSRNWKR 14
+PA RS ++R P R+ R+ R
Sbjct: 639 SPARRSGRSRSRTPARRGRSRSR 661
>AF490258-1|AAO85466.1| 667|Homo sapiens XTP9 protein.
Length = 667
Score = 30.3 bits (65), Expect = 4.9
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -1
Query: 283 IGKNGISAERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSR 104
+G++G AER + VKE +S A R A PP+ + V +++G +
Sbjct: 432 LGRSGAPAEREAEPRVKESRSPAKEEAAKMPAR--ASPPHSKAAPGDVKVKEERGEDEAS 489
Query: 103 LSPSRWVNPA 74
P+ ++PA
Sbjct: 490 EPPAGGLHPA 499
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 30.3 bits (65), Expect = 4.9
Identities = 21/83 (25%), Positives = 35/83 (42%)
Frame = -1
Query: 262 AERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 83
A R R + ++ R T+ + + P R + R ++ T S SR
Sbjct: 579 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 638
Query: 82 NPA*RSRIIQNRIPTRKSRNWKR 14
+PA RS ++R P R+ R+ R
Sbjct: 639 SPARRSGRSRSRTPARRGRSRSR 661
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 30.3 bits (65), Expect = 4.9
Identities = 21/83 (25%), Positives = 35/83 (42%)
Frame = -1
Query: 262 AERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 83
A R R + ++ R T+ + + P R + R ++ T S SR
Sbjct: 579 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 638
Query: 82 NPA*RSRIIQNRIPTRKSRNWKR 14
+PA RS ++R P R+ R+ R
Sbjct: 639 SPARRSGRSRSRTPARRGRSRSR 661
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 30.3 bits (65), Expect = 4.9
Identities = 21/83 (25%), Positives = 35/83 (42%)
Frame = -1
Query: 262 AERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 83
A R R + ++ R T+ + + P R + R ++ T S SR
Sbjct: 544 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 603
Query: 82 NPA*RSRIIQNRIPTRKSRNWKR 14
+PA RS ++R P R+ R+ R
Sbjct: 604 SPARRSGRSRSRTPARRGRSRSR 626
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 30.3 bits (65), Expect = 4.9
Identities = 21/83 (25%), Positives = 35/83 (42%)
Frame = -1
Query: 262 AERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 83
A R R + ++ R T+ + + P R + R ++ T S SR
Sbjct: 369 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 428
Query: 82 NPA*RSRIIQNRIPTRKSRNWKR 14
+PA RS ++R P R+ R+ R
Sbjct: 429 SPARRSGRSRSRTPARRGRSRSR 451
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 30.3 bits (65), Expect = 4.9
Identities = 21/83 (25%), Positives = 35/83 (42%)
Frame = -1
Query: 262 AERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 83
A R R + ++ R T+ + + P R + R ++ T S SR
Sbjct: 627 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 686
Query: 82 NPA*RSRIIQNRIPTRKSRNWKR 14
+PA RS ++R P R+ R+ R
Sbjct: 687 SPARRSGRSRSRTPARRGRSRSR 709
>AB046765-1|BAB13371.2| 968|Homo sapiens KIAA1545 protein protein.
Length = 968
Score = 29.9 bits (64), Expect = 6.5
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -1
Query: 283 IGKNGISAERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSR 104
+G++G AER + VKE +S A R A PP+ + V +++G +
Sbjct: 733 LGRSGAPAEREAEPRVKESRSPAKEEVAKMPAR--ASPPHSKAAPGDVKVKEERGEDEAS 790
Query: 103 LSPSRWVNPA 74
P+ ++PA
Sbjct: 791 EPPAGGLHPA 800
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,530,764
Number of Sequences: 237096
Number of extensions: 710729
Number of successful extensions: 3441
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3383
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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