Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0063.Seq
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42062| Best HMM Match : DUF465 (HMM E-Value=3.4)                    29   3.1  
SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_8742| Best HMM Match : TPR_2 (HMM E-Value=0.00046)                  27   9.6  

>SB_42062| Best HMM Match : DUF465 (HMM E-Value=3.4)
          Length = 133

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 338 KPNINHSSSPKYSSRLKIYNNPLKIKDKYHRSLM*TKGK--CLSYLQFPFKG 487
           K  +N   + KYS+RLK      K+KD    ++  +KGK   ++ + F F G
Sbjct: 81  KDPLNFEDTKKYSARLKDAMEKTKLKDAVRTAVGKSKGKDLVIACMDFAFIG 132


>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 121 VSHRTSLSKDSIKLSNRLRGSTRDN--NLXKLISYXKFXXFSXTSLCFVRSALIP 279
           V H  SLSKD++KL  ++ GS   +   +  +     F     + LC V+   +P
Sbjct: 58  VGHEVSLSKDAMKLHFKMEGSVNGHCFEIQGVGEGKAFDGEHWSKLCVVKGKHLP 112


>SB_8742| Best HMM Match : TPR_2 (HMM E-Value=0.00046)
          Length = 940

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 326 DSRLKPNINHSSSPKYSSRLKIYNNPLKIKD 418
           D+RLK N   +  PK +S     NN L IKD
Sbjct: 141 DARLKKNNTEAKKPKRTSDGHPNNNTLNIKD 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,674,102
Number of Sequences: 59808
Number of extensions: 83157
Number of successful extensions: 201
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)