Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0063.Seq
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021387-1|CAE17853.1|  187|Caenorhabditis elegans Hypothetical ...    28   3.6  
U41279-12|AAK31419.1|  110|Caenorhabditis elegans Hypothetical p...    27   8.3  

>AL021387-1|CAE17853.1|  187|Caenorhabditis elegans Hypothetical
           protein H01A20.2 protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 88  NHLKVNIKDS*VSHRTSLSKDSIKLSNRLR 177
           N LK  I D  ++H  + +KD +   NRLR
Sbjct: 123 NQLKATIDDEIIAHLGAFAKDDVITENRLR 152


>U41279-12|AAK31419.1|  110|Caenorhabditis elegans Hypothetical
           protein C17C3.5 protein.
          Length = 110

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 329 SRLKPNINHSSSPKYSSRLKIYNNPLKIKDKYHRSLM*TKGKCL 460
           +++KP +     P Y +  + YN  L++++ Y RS++   G  +
Sbjct: 53  NKIKPEVLKVFHPNYIATDRDYNEMLELRNDYFRSIVYAGGSSI 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,779,362
Number of Sequences: 27780
Number of extensions: 58838
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)