Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0040.Seq
(347 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN full... 170 7e-42
UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93; Eukaryo... 170 7e-42
UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82; Eukaryo... 147 5e-35
UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21; Eukaryo... 131 4e-30
UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4; Eukaryot... 128 3e-29
UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8; Euteleostomi... 109 1e-23
UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19; Eukaryo... 109 1e-23
UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces ... 108 3e-23
UniRef50_UPI000049933B Cluster: conserved hypothetical protein; ... 107 7e-23
UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;... 97 1e-19
UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamb... 80 9e-15
UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitoz... 75 3e-13
UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillard... 74 8e-13
UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7; Archaea... 66 1e-10
UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella... 62 2e-09
UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5; Euryarc... 59 2e-08
UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5; Archaea... 58 4e-08
UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3; Euryarc... 52 4e-06
UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 48 3e-05
UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1; Methano... 48 4e-05
UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2; Thermoprote... 47 1e-04
UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4; Archaea... 46 1e-04
UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5; Methano... 42 0.003
UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3; Desulfu... 41 0.005
UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1; Methano... 39 0.027
UniRef50_A7F1W3 Cluster: Putative uncharacterized protein; n=1; ... 38 0.036
UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 38 0.048
UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: ... 37 0.11
UniRef50_UPI0000DB7956 Cluster: PREDICTED: similar to Deformed C... 35 0.44
UniRef50_UPI0000F32D0C Cluster: Zinc finger CCCH domain-containi... 34 0.59
UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2; Meth... 33 1.8
UniRef50_Q08499-12 Cluster: Isoform 12 of Q08499 ; n=3; Tetrapod... 29 3.8
UniRef50_Q5YW59 Cluster: Putative phosphoglycerate mutase; n=2; ... 31 4.1
UniRef50_A0WA04 Cluster: Putative uncharacterized protein; n=2; ... 31 4.1
UniRef50_UPI000065DB2D Cluster: Probable histone-lysine N-methyl... 31 5.5
UniRef50_Q28UX2 Cluster: Putative uncharacterized protein; n=1; ... 31 7.2
UniRef50_Q6CDE3 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 31 7.2
UniRef50_UPI0000383847 Cluster: hypothetical protein Magn0300622... 30 9.5
UniRef50_Q5LV53 Cluster: Non-ribosomal peptide synthase; n=5; Rh... 30 9.5
UniRef50_A7CNZ2 Cluster: RecT protein; n=1; Opitutaceae bacteriu... 30 9.5
UniRef50_A5V4W5 Cluster: TonB-dependent receptor precursor; n=1;... 30 9.5
UniRef50_A4FG99 Cluster: Nitrite reductase (NAD(P)H) small subun... 30 9.5
UniRef50_A7SIS0 Cluster: Predicted protein; n=1; Nematostella ve... 30 9.5
UniRef50_A7AT17 Cluster: Putative uncharacterized protein; n=2; ... 30 9.5
UniRef50_Q6CK55 Cluster: Similarity; n=2; Kluyveromyces lactis|R... 30 9.5
>UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence; n=9;
Deuterostomia|Rep: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence - Mus
musculus (Mouse)
Length = 152
Score = 170 bits (413), Expect = 7e-42
Identities = 79/115 (68%), Positives = 87/115 (75%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 182
RD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GN
Sbjct: 5 RDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGN 64
Query: 183 FSWGSECSTRKTRIIDVVYNASNNNWCVQRPLSRMQLX**MQLHSGSWYESHYTL 347
FSWGSEC TRKTRIIDVVYNASNN + L + + WYESHY L
Sbjct: 65 FSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 119
>UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93;
Eukaryota|Rep: 40S ribosomal protein S8 - Homo sapiens
(Human)
Length = 208
Score = 170 bits (413), Expect = 7e-42
Identities = 79/115 (68%), Positives = 87/115 (75%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 182
RD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GN
Sbjct: 5 RDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGN 64
Query: 183 FSWGSECSTRKTRIIDVVYNASNNNWCVQRPLSRMQLX**MQLHSGSWYESHYTL 347
FSWGSEC TRKTRIIDVVYNASNN + L + + WYESHY L
Sbjct: 65 FSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 119
>UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82;
Eukaryota|Rep: 40S ribosomal protein S8 - Drosophila
melanogaster (Fruit fly)
Length = 208
Score = 147 bits (356), Expect = 5e-35
Identities = 71/115 (61%), Positives = 82/115 (71%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 182
RD HKRRATGGKR +RKKRK+ELGRPAANT+LG R+H VR+RGGNTK RALRL+TGN
Sbjct: 5 RDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGN 64
Query: 183 FSWGSECSTRKTRIIDVVYNASNNNWCVQRPLSRMQLX**MQLHSGSWYESHYTL 347
F+W SE RKTRI DVVYNASNN + L + + WYE+HY L
Sbjct: 65 FAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVL 119
>UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21;
Eukaryota|Rep: 40S ribosomal protein S8 - Zea mays
(Maize)
Length = 221
Score = 131 bits (316), Expect = 4e-30
Identities = 66/114 (57%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTG 179
RD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTG
Sbjct: 5 RDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTG 64
Query: 180 NFSWGSECSTRKTRIIDVVYNASNNNWCVQRPLSRMQLX**MQLHSGSWYESHY 341
N+SWGSE TRKTRI+DVVYNASNN + L + + WY +HY
Sbjct: 65 NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHY 118
>UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4;
Eukaryota|Rep: 40S ribosomal protein S8 - Theileria
parva
Length = 188
Score = 128 bits (308), Expect = 3e-29
Identities = 61/115 (53%), Positives = 80/115 (69%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 182
RD HKRR TGG+ +KKRKYELGRP++NT+LG + + VR RGGN K+RALRLD+GN
Sbjct: 5 RDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGSKLVRKVRCRGGNLKFRALRLDSGN 64
Query: 183 FSWGSECSTRKTRIIDVVYNASNNNWCVQRPLSRMQLX**MQLHSGSWYESHYTL 347
FSWGS+ TRKTR++DVVYNAS+N + L + + W+++HY L
Sbjct: 65 FSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGL 119
>UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8;
Euteleostomi|Rep: Ribosomal protein S8 - Homo sapiens
(Human)
Length = 188
Score = 109 bits (263), Expect = 1e-23
Identities = 62/115 (53%), Positives = 70/115 (60%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 182
RD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG
Sbjct: 5 RDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG------------- 51
Query: 183 FSWGSECSTRKTRIIDVVYNASNNNWCVQRPLSRMQLX**MQLHSGSWYESHYTL 347
C TRKTRIIDVVYNASNN + L + + WYESHY L
Sbjct: 52 ------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 99
Score = 38.7 bits (86), Expect = 0.027
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +2
Query: 257 LVRTKTLVKNAIXVVDATPFRQ 322
LVRTKTLVKN I ++D+TP+RQ
Sbjct: 70 LVRTKTLVKNCIVLIDSTPYRQ 91
>UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19;
Eukaryota|Rep: 40S ribosomal protein S8 - Leishmania
major
Length = 220
Score = 109 bits (263), Expect = 1e-23
Identities = 55/113 (48%), Positives = 69/113 (61%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 182
R HKR+ TGGK RK+ K ELGR ANTRLG +R+ VR+RGGN K RALRLDTGN
Sbjct: 5 RSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGARRVSPVRARGGNFKIRALRLDTGN 64
Query: 183 FSWGSECSTRKTRIIDVVYNASNNNWCVQRPLSRMQLX**MQLHSGSWYESHY 341
F+W SE + R++DVVYNA++N + L + + WY HY
Sbjct: 65 FAWASEAIAHRVRLLDVVYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHY 117
>UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces
capsulatus NAm1|Rep: Ribosomal protein S8 - Ajellomyces
capsulatus NAm1
Length = 141
Score = 108 bits (259), Expect = 3e-23
Identities = 50/77 (64%), Positives = 59/77 (76%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 182
RD HKR ATG KR+ RKKR +E GR ANTR+GP+RIH VR+RGGN K+R LRL++GN
Sbjct: 5 RDSRHKRSATGAKRSHYRKKRAFEKGRQPANTRIGPKRIHLVRTRGGNQKFRGLRLESGN 64
Query: 183 FSWGSECSTRKTRIIDV 233
FSWGSE RK R+I V
Sbjct: 65 FSWGSEGIARKVRVIVV 81
>UniRef50_UPI000049933B Cluster: conserved hypothetical protein;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 237
Score = 107 bits (256), Expect = 7e-23
Identities = 50/86 (58%), Positives = 65/86 (75%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 182
RD HKRRATGGK+ ++KK+K +GR ANTRLG R+H VR R G K RALRL+ GN
Sbjct: 5 RDSRHKRRATGGKKNSMQKKKKNTMGRQPANTRLGAIRVHDVRCRYGIIKRRALRLENGN 64
Query: 183 FSWGSECSTRKTRIIDVVYNASNNNW 260
FSW S+ T+ T+I++VVYNAS+N++
Sbjct: 65 FSWASQSITKGTKILNVVYNASDNDF 90
>UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;
Zea mays|Rep: Putative 40S ribosomal protein S8 - Zea
mays (Maize)
Length = 245
Score = 96.7 bits (230), Expect = 1e-19
Identities = 49/103 (47%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Frame = +3
Query: 36 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 212
G P+++++ YELGR ANT+L + + VR RGGNTK+RALR DT N+SWGSE TR
Sbjct: 113 GPFCPLQEEQGYELGRQPANTKLSSNKTVRRVRVRGGNTKWRALRFDTCNYSWGSEALTR 172
Query: 213 KTRIIDVVYNASNNNWCVQRPLSRMQLX**MQLHSGSWYESHY 341
KTRI+DVVY A+NN + L + + WY +HY
Sbjct: 173 KTRILDVVYIATNNELVRTQTLVKSAIVQVDAAPFKQWYLTHY 215
>UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamblia
ATCC 50803|Rep: Ribosomal protein S8 - Giardia lamblia
ATCC 50803
Length = 174
Score = 80.2 bits (189), Expect = 9e-15
Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 9/92 (9%)
Frame = +3
Query: 6 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRL---------GPQRIHSVRSRGGNTKYR 158
D +KR TG + KKRKY LGR ANT+L Q+I ++R RGGN K R
Sbjct: 6 DKMYKRSKTGAVQGKWHKKRKYNLGRQPANTKLIVKVTSKKNEGQKISTIRCRGGNIKRR 65
Query: 159 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNN 254
ALRL G+F+WGS + K RI+ VVYN+++N
Sbjct: 66 ALRLSHGSFAWGSADISHKARILQVVYNSTSN 97
>UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitozoon
cuniculi|Rep: Ribosomal protein S8 - Encephalitozoon
cuniculi
Length = 173
Score = 75.4 bits (177), Expect = 3e-13
Identities = 35/80 (43%), Positives = 51/80 (63%)
Frame = +3
Query: 15 HKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWG 194
HKRR TG K RKKR G ++T++G +++ VR RGGN KY+ALRLD G+F +
Sbjct: 9 HKRRKTGAKAVISRKKRNNRAGSQPSSTKIGERKVTPVRVRGGNRKYKALRLDMGHFKFI 68
Query: 195 SECSTRKTRIIDVVYNASNN 254
+ R +++ VVY+ S+N
Sbjct: 69 TTGKFRMAKLLQVVYHPSSN 88
>UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillardia
theta|Rep: 40S ribosomal protein S8 - Guillardia theta
(Cryptomonas phi)
Length = 178
Score = 73.7 bits (173), Expect = 8e-13
Identities = 37/84 (44%), Positives = 54/84 (64%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 182
R+ HKR++TGG ++ RKKR + GR +NT++G + + +R RGG K RAL L GN
Sbjct: 5 REGLHKRKSTGGLKSCWRKKRNHAKGRQPSNTKIGRRCVVKLRVRGGGVKTRALFLSYGN 64
Query: 183 FSWGSECSTRKTRIIDVVYNASNN 254
FS+ S T K +I+ V +N S+N
Sbjct: 65 FSFVSIQRTFKAKILSVAFNESSN 88
>UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7;
Archaea|Rep: 30S ribosomal protein S8e - Picrophilus
torridus
Length = 125
Score = 66.5 bits (155), Expect = 1e-10
Identities = 35/84 (41%), Positives = 51/84 (60%)
Frame = +3
Query: 21 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 200
R+ +GGK P KR+YELGR TRLG + + +RS GGN+K+ LR D N +
Sbjct: 10 RKPSGGKLRPNHSKRRYELGREPTLTRLGDRELRKIRSYGGNSKFALLRCDYANVYNPKD 69
Query: 201 CSTRKTRIIDVVYNASNNNWCVQR 272
+TRK +I V N+++ ++ VQR
Sbjct: 70 KTTRKVKINTVKENSADPHY-VQR 92
>UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella
natans|Rep: Ribosomal protein S8 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 176
Score = 62.5 bits (145), Expect = 2e-09
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = +3
Query: 18 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWG 194
K++ TGGK+ I KK+ + G NT L I R RGGN K++A+ L G+F W
Sbjct: 3 KKKLTGGKKKKISKKKNHSKGNNPTNTVLRRANFIKMTRVRGGNFKFKAISLGKGSFQWK 62
Query: 195 SECSTRKTRIIDVVYNASNNNWCVQRPLSR 284
+ ++ ++I+ V+YN +N +R LS+
Sbjct: 63 TMQLSKNSKILSVLYNQANLKLVQKRNLSK 92
>UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Thermoplasma acidophilum
Length = 127
Score = 59.3 bits (137), Expect = 2e-08
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 21 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWGS 197
++ATGG RKKR++ELGR T+LG + V R+ GGNTK +T N S
Sbjct: 10 KKATGGSLKQSRKKRRFELGREPTLTKLGTKTERKVIRTMGGNTKVILFTAETANVYDAS 69
Query: 198 ECSTRKTRIIDVVYNASNNNWCVQR 272
E +K +II V N +N+++ VQR
Sbjct: 70 EKKIKKAKIITVKANPANSHY-VQR 93
>UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5;
Archaea|Rep: 30S ribosomal protein S8e - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 125
Score = 58.0 bits (134), Expect = 4e-08
Identities = 31/88 (35%), Positives = 53/88 (60%)
Frame = +3
Query: 21 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 200
R+ +GG+ + K++ E+GR A T +G +R VR+ GGN K RALRL+ S +
Sbjct: 9 RKPSGGRYHTSQGKKRTEIGRAPAETHIGEERRRIVRTFGGNQKVRALRLEYATVSNPAT 68
Query: 201 CSTRKTRIIDVVYNASNNNWCVQRPLSR 284
T+KT+I V N+++ N+ ++ L++
Sbjct: 69 GETKKTKIEAVEANSADPNYVRRKLLTK 96
>UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Uncultured methanogenic archaeon RC-I
Length = 125
Score = 51.6 bits (118), Expect = 4e-06
Identities = 27/80 (33%), Positives = 42/80 (52%)
Frame = +3
Query: 21 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 200
R+ATGG+ R KRK+ELGR +G Q++ + G +K R L+ D N +
Sbjct: 9 RKATGGRLRLNRSKRKFELGRDFTIPVIGAQKLKVLNVTGNGSKVRVLKSDVVNVTDPKT 68
Query: 201 CSTRKTRIIDVVYNASNNNW 260
T+K ++ V N +N N+
Sbjct: 69 GKTQKVKMTTVTENPANKNY 88
>UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrococcus
horikoshii
Length = 127
Score = 48.4 bits (110), Expect = 3e-05
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +3
Query: 21 RRATGGKRAPIRKKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGNFSWGS 197
++ +GG+ RKKRK ELGR +NTR+ Q + +R+ GGN K R N +
Sbjct: 10 KKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYANV-FDK 68
Query: 198 ECSTRKTRIIDVVYNASNNNW 260
RK RII V+ N +N +
Sbjct: 69 SGKGRKVRIIRVLENPANRQF 89
>UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S8e -
Methanopyrus kandleri
Length = 133
Score = 48.0 bits (109), Expect = 4e-05
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Frame = +3
Query: 12 WHKR---RATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDT- 176
WH R + TGG+ P RKKRK+E+G P T +G +R + R GGN K + L+ T
Sbjct: 4 WHGRSLRKPTGGRIRPHRKKRKFEMGNPPTETLVGEERKLKERRGMGGNVK-KGLKFATH 62
Query: 177 GNFSWGSECSTRKTRIIDVVYNASN 251
N + + RI +VV N ++
Sbjct: 63 ANVADPETGEVKCVRIEEVVKNPAS 87
>UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2;
Thermoprotei|Rep: Ribosomal protein S8E - Cenarchaeum
symbiosum
Length = 129
Score = 46.8 bits (106), Expect = 1e-04
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +3
Query: 24 RATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSEC 203
+ TGG+R P+R +RKYE+ R G Q + + RG TK +D N +
Sbjct: 12 KLTGGRRHPLRTRRKYEIDRYPNEALSGAQETVTRKVRGKRTKTALKTIDFVNLA-VQGA 70
Query: 204 STRKTRIIDVVYNASNNNW 260
+K++I+ V+ N +NN++
Sbjct: 71 KVKKSKIVKVLENPTNNDY 89
>UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4;
Archaea|Rep: 30S ribosomal protein S8e - Sulfolobus
solfataricus
Length = 133
Score = 46.4 bits (105), Expect = 1e-04
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 21 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH-SVRSRGGNTKYRALRLDTGNFSWGS 197
R+ TGG + R KRKYE+G P T L + I R+ GGN K R T N +
Sbjct: 10 RKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPA 69
Query: 198 ECSTRKTRIIDVVYNASN 251
+ +K +I++++ +N
Sbjct: 70 TNTAKKVKILEILETPAN 87
>UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5;
Methanococcus|Rep: 30S ribosomal protein S8e -
Methanococcus maripaludis
Length = 128
Score = 41.9 bits (94), Expect = 0.003
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +3
Query: 18 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGNFSWG 194
+R +TG K KK K E+GRPAA T++ + + VR RG N K + + + N
Sbjct: 9 RRLSTGAKVWRAAKKHKREMGRPAAETQVSDKIKRKIVRCRGANLKVKLEKTNYANVFDQ 68
Query: 195 SECSTRKTRIIDVVYNASNNNW 260
+ +K + +V+ N +N ++
Sbjct: 69 ANKVCKKVVVTNVIDNKANKHY 90
>UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3;
Desulfurococcales|Rep: 30S ribosomal protein S8e -
Aeropyrum pernix
Length = 136
Score = 41.1 bits (92), Expect = 0.005
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +3
Query: 18 KRRATGGKRAPIRK-KRKYELGRPAANTRLG---PQRIHSVRSRGGNTKYRALRLDTGNF 185
K++ +GGKR K KRKY GRP T L + VR+RGG+ K +A ++
Sbjct: 9 KKKPSGGKRRYYYKVKRKYAAGRPPTYTTLSAAEEEERKPVRARGGSYKIKAKKVAFAVV 68
Query: 186 SWGSECSTRKTRIIDVVYNASNNNW 260
S RK RI+ +V ++ +
Sbjct: 69 SNPKTGEARKARILRIVETPAHREY 93
>UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: 30S ribosomal
protein S8e - Methanosphaera stadtmanae (strain DSM
3091)
Length = 126
Score = 38.7 bits (86), Expect = 0.027
Identities = 22/80 (27%), Positives = 40/80 (50%)
Frame = +3
Query: 21 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 200
R+ +G + + KR E GR A TR+G + + +RG TK RA N +
Sbjct: 10 RKPSGARSRRNKNKRNAEFGRNPAETRIGDEVKKEIVARGNCTKTRATVAKRINVIDPKD 69
Query: 201 CSTRKTRIIDVVYNASNNNW 260
S++ ++ V+ N +N+++
Sbjct: 70 NSSKNVEMLTVLENGANSHF 89
>UniRef50_A7F1W3 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 622
Score = 38.3 bits (85), Expect = 0.036
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -2
Query: 280 DKGLCTHQLLLDALYTTSMIRVLRVEHSDPQEKLPVS 170
D GL + LL D +Y T I +R EH DP++ LP S
Sbjct: 302 DLGLADYNLLFDTIYATPPIARVRSEHEDPRDNLPDS 338
>UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrobaculum
aerophilum
Length = 131
Score = 37.9 bits (84), Expect = 0.048
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +3
Query: 21 RRATGGKRAPIRKKRKYEL-GRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWG 194
++ +GGK+ +RK +K L G P +LG V R RGGN K R N
Sbjct: 13 KKPSGGKKRKVRKTKKKALGGGPPQIPKLGENDTRIVERVRGGNLKVRLREAKFANVYIP 72
Query: 195 SECSTRKTRIIDVVYNASN 251
E + K +II ++ +N
Sbjct: 73 KERKSVKAKIISIISTPAN 91
>UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: TPR
repeat - Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264)
Length = 556
Score = 36.7 bits (81), Expect = 0.11
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 27 ATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSR 137
A G +RAP K YE R AA TRL P + ++R R
Sbjct: 268 ALGAERAPANLKANYEKERDAAGTRLSPAELEALRGR 304
>UniRef50_UPI0000DB7956 Cluster: PREDICTED: similar to Deformed
CG2189-PA; n=1; Apis mellifera|Rep: PREDICTED: similar
to Deformed CG2189-PA - Apis mellifera
Length = 284
Score = 34.7 bits (76), Expect = 0.44
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 7 ITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSVLSVSTPFVHVVEILS 153
+TG+ EGPP G + GS+S P +P + L VS P +H I S
Sbjct: 230 VTGMMEGPPGGGPLGHIASGSISPLAPATSPSATLQVSAP-IHPPPIKS 277
>UniRef50_UPI0000F32D0C Cluster: Zinc finger CCCH domain-containing
protein 6.; n=1; Bos taurus|Rep: Zinc finger CCCH
domain-containing protein 6. - Bos Taurus
Length = 770
Score = 34.3 bits (75), Expect = 0.59
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +1
Query: 4 GITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSVLS 114
G S GP G + PYA + S S G+PL TPGSVLS
Sbjct: 595 GAVPSSSGP--GALPPYAPKLSSSTGLPLGTPGSVLS 629
>UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2;
Methylobacterium extorquens PA1|Rep:
Exodeoxyribonuclease III Xth - Methylobacterium
extorquens PA1
Length = 344
Score = 32.7 bits (71), Expect = 1.8
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 24 RATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL-DTGNFSWGSE 200
R G+R P+R++ + E RP A+ R P H+ R+R G R L + + F + S
Sbjct: 7 RGLAGRRGPLRRRGRRERLRPLADDR-RPALRHAARARPGGGGGRGLTVCEARRFRYRSG 65
Query: 201 CSTRKTRIIDV 233
S ++ I V
Sbjct: 66 SSRHASQAIPV 76
>UniRef50_Q08499-12 Cluster: Isoform 12 of Q08499 ; n=3;
Tetrapoda|Rep: Isoform 12 of Q08499 - Homo sapiens
(Human)
Length = 219
Score = 29.5 bits (63), Expect(2) = 3.8
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 115 VSTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTIIGAYKD 273
+ TPF V+ L TVR + +T+L DR P+ I TI G++ +
Sbjct: 158 IVTPFAQVLASLRTVRNNFAALTNLQDRAPSKRSPMCNQPSINKATITGSWME 210
Score = 21.0 bits (42), Expect(2) = 3.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 85 PLQTPGSVLSVSTPFVH 135
P+ +PGS L + FVH
Sbjct: 104 PMTSPGSGLILQANFVH 120
>UniRef50_Q5YW59 Cluster: Putative phosphoglycerate mutase; n=2;
Actinomycetales|Rep: Putative phosphoglycerate mutase -
Nocardia farcinica
Length = 234
Score = 31.5 bits (68), Expect = 4.1
Identities = 21/50 (42%), Positives = 23/50 (46%)
Frame = +3
Query: 12 WHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRA 161
W RA +R R+ EL PAA RL PQ H R R G YRA
Sbjct: 102 WSPPRAVLDERLRDREMGVLELHPPAAIRRLAPQEAHR-RIRQGEWAYRA 150
>UniRef50_A0WA04 Cluster: Putative uncharacterized protein; n=2;
Geobacter lovleyi SZ|Rep: Putative uncharacterized
protein - Geobacter lovleyi SZ
Length = 321
Score = 31.5 bits (68), Expect = 4.1
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 29 HRWETCAHTQEEEV*VRASRCKHQARS-SAYPLRSFTWWK 145
HRW T H+Q E + A R +A++ SA +RSF WK
Sbjct: 3 HRWPTSLHSQTEAI-FHAVRSIREAKADSALGIRSFGSWK 41
>UniRef50_UPI000065DB2D Cluster: Probable histone-lysine
N-methyltransferase ASH1L (EC 2.1.1.43) (ASH1- like
protein) (Absent small and homeotic disks protein 1
homolog) (huASH1).; n=1; Takifugu rubripes|Rep: Probable
histone-lysine N-methyltransferase ASH1L (EC 2.1.1.43)
(ASH1- like protein) (Absent small and homeotic disks
protein 1 homolog) (huASH1). - Takifugu rubripes
Length = 2057
Score = 31.1 bits (67), Expect = 5.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 213 CELNIPIPKRSYRCPDAAHGT*YFHHVNE 127
C L+ P+P SYR P + H HHVN+
Sbjct: 925 CCLDAPVPHHSYRAPPSKHS---LHHVNK 950
>UniRef50_Q28UX2 Cluster: Putative uncharacterized protein; n=1;
Jannaschia sp. CCS1|Rep: Putative uncharacterized
protein - Jannaschia sp. (strain CCS1)
Length = 288
Score = 30.7 bits (66), Expect = 7.2
Identities = 23/63 (36%), Positives = 29/63 (46%)
Frame = +1
Query: 79 GVPLQTPGSVLSVSTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTII 258
G L T G S P + V I + CV+ V SL D V+ A P L+L + II
Sbjct: 162 GRDLATRG--FSTGLPTMTVAVITAAAICVFGGVMSLTDEWVRPALPHLLLLAAASVCII 219
Query: 259 GAY 267
G Y
Sbjct: 220 GGY 222
>UniRef50_Q6CDE3 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 356
Score = 30.7 bits (66), Expect = 7.2
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +3
Query: 15 HKRRATG-GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSW 191
H R A+ +R+ + + P + +H +KYR+L+ D + W
Sbjct: 168 HTRAASAISERSSSSTHSGFSMASPDSAVSATFDGMHDSEDEALESKYRSLQQDLDDLHW 227
Query: 192 GSECSTRKTRIIDVVYNASNNN 257
E K R + Y A++NN
Sbjct: 228 VDEVKPEKPRKMSSRYYANHNN 249
>UniRef50_UPI0000383847 Cluster: hypothetical protein Magn03006228;
n=1; Magnetospirillum magnetotacticum MS-1|Rep:
hypothetical protein Magn03006228 - Magnetospirillum
magnetotacticum MS-1
Length = 330
Score = 30.3 bits (65), Expect = 9.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 36 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSR 137
G+R P R++ E RPA +R GP + + R+R
Sbjct: 181 GRRPPARRRVLRERARPAGRSRTGPAPVXAGRAR 214
>UniRef50_Q5LV53 Cluster: Non-ribosomal peptide synthase; n=5;
Rhodobacteraceae|Rep: Non-ribosomal peptide synthase -
Silicibacter pomeroyi
Length = 2141
Score = 30.3 bits (65), Expect = 9.5
Identities = 24/67 (35%), Positives = 27/67 (40%)
Frame = -2
Query: 283 LDKGLCTHQLLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPPRERTEWIR*GP 104
LDKG H LLD T L + D +PVS RS R P E W+R P
Sbjct: 1575 LDKGYRMHPGLLDL--ATGWAIELAAGYDDTTLWVPVSYRSIRVHAPLPAEIRSWMRLTP 1632
Query: 103 SLVFAAG 83
AG
Sbjct: 1633 DQASVAG 1639
>UniRef50_A7CNZ2 Cluster: RecT protein; n=1; Opitutaceae bacterium
TAV2|Rep: RecT protein - Opitutaceae bacterium TAV2
Length = 471
Score = 30.3 bits (65), Expect = 9.5
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 181 TSLGDRNVQLA--KPVSLMLCIMHLTIIGAYKDP 276
TSL RN +LA +PVS C+ IG Y DP
Sbjct: 44 TSLIHRNPELANCEPVSFFACLSDCATIGVYPDP 77
>UniRef50_A5V4W5 Cluster: TonB-dependent receptor precursor; n=1;
Sphingomonas wittichii RW1|Rep: TonB-dependent receptor
precursor - Sphingomonas wittichii RW1
Length = 803
Score = 30.3 bits (65), Expect = 9.5
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Frame = +1
Query: 4 GITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSVLSVSTPFVHVVEILSTVR-CVWTPV 180
GI + GN Y G P GS L P + + STV+ WTP+
Sbjct: 488 GIRWTEDKKTFGNANQYVVEAGFLTGAPFNPDGSGLQNGDPLMGPLGQRSTVKDTAWTPM 547
Query: 181 TSLGDR 198
SL R
Sbjct: 548 ASLSYR 553
>UniRef50_A4FG99 Cluster: Nitrite reductase (NAD(P)H) small subunit;
n=1; Saccharopolyspora erythraea NRRL 2338|Rep: Nitrite
reductase (NAD(P)H) small subunit - Saccharopolyspora
erythraea (strain NRRL 23338)
Length = 107
Score = 30.3 bits (65), Expect = 9.5
Identities = 22/60 (36%), Positives = 29/60 (48%)
Frame = +1
Query: 10 TGISEGPPVGNVRPYARRGSMS*GVPLQTPGSVLSVSTPFVHVVEILSTVRCVWTPVTSL 189
TG E VGNV PY G +S G+ G +V++P + V L T C+ P T L
Sbjct: 32 TGDGELFAVGNVDPYCGAGVISRGIVGDREGEP-TVASPMLKQVFSLRTGECLDDPGTRL 90
>UniRef50_A7SIS0 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 2279
Score = 30.3 bits (65), Expect = 9.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 24 RATGGKRAPIRKKRKYELGRPAANTRLGP 110
R GG R P+++ +E +P+ N R GP
Sbjct: 550 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 578
>UniRef50_A7AT17 Cluster: Putative uncharacterized protein; n=2;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 990
Score = 30.3 bits (65), Expect = 9.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 292 NCILDKGLCTHQLLLDALYTTSMIRVLR 209
NCI D+G+ T QL+L++ Y + ++R
Sbjct: 606 NCITDRGIATSQLILESTYHEHNVLLIR 633
>UniRef50_Q6CK55 Cluster: Similarity; n=2; Kluyveromyces lactis|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 1336
Score = 30.3 bits (65), Expect = 9.5
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -3
Query: 210 ELNIPIPKRSYRCPDAAHGT*YFHHVNERSGYAEDRAWCLQRDALTHTSS 61
ELNIP P AA + FHHV+E+ E D + TSS
Sbjct: 512 ELNIPTIFEKKDNPQAASASGTFHHVDEKQSTEETAKLLALSDTSSETSS 561
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 399,972,061
Number of Sequences: 1657284
Number of extensions: 8269318
Number of successful extensions: 20854
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 20353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20827
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 11131607110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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